Variant report

Variant	rs399391
Chromosome Location	chr6:15797143-15797144
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15797087..15799471-chr6:16128191..16130784,2	MCF-7	breast:
2	chr6:15793143..15797186-chr6:15800762..15804369,3	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs16876927	0.81[ASN][1000 genomes]
rs16876933	0.81[ASN][1000 genomes]
rs16876977	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1887604	1.00[CHB][hapmap]
rs1927573	0.81[ASN][1000 genomes]
rs1927574	0.81[ASN][1000 genomes]
rs1927578	1.00[CHB][hapmap]
rs220888	1.00[CHB][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs220889	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs364837	0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs372993	0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs378646	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs387754	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs388044	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs389429	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs389746	0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs398529	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs399732	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs400186	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs400543	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs401126	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs407288	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs420036	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs420048	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs421665	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs421918	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs441539	0.89[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap]
rs443804	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs453613	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs563398	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs563417	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6933904	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9358071	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9367881	0.81[ASN][1000 genomes]
rs9370827	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9370828	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9370829	1.00[EUR][1000 genomes]
rs9383075	1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap]
rs9383076	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs9383078	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9383079	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9396604	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9396605	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15791000-15798000	Enhancers	Fetal Muscle Leg	muscle
2	chr6:15793200-15797600	Enhancers	Fetal Heart	heart
3	chr6:15795400-15797600	Enhancers	HSMMtube	muscle
4	chr6:15796000-15797800	Enhancers	Psoas Muscle	Psoas
5	chr6:15796400-15797200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr6:15796400-15797400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:15796400-15797400	Enhancers	Left Ventricle	heart
8	chr6:15796400-15797400	Enhancers	Right Atrium	heart
9	chr6:15796400-15797400	Enhancers	Right Ventricle	heart
10	chr6:15796400-15798000	Enhancers	Placenta	Placenta
11	chr6:15796800-15797200	Weak transcription	Aorta	Aorta
12	chr6:15796800-15797400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr6:15796800-15797600	Enhancers	HMEC	breast
14	chr6:15797000-15797800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr6:15797000-15798000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr6:15797000-15799000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood

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