Variant report

Variant	rs420048
Chromosome Location	chr6:15798078-15798079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15793178..15795083-chr6:15797445..15798994,2	K562	blood:
2	chr6:15797087..15799471-chr6:16128191..16130784,2	MCF-7	breast:
3	chr6:15784288..15786128-chr6:15797785..15800646,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs16876977	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs220888	1.00[EUR][1000 genomes]
rs220889	1.00[EUR][1000 genomes]
rs364837	0.94[ASN][1000 genomes]
rs372993	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs378646	1.00[EUR][1000 genomes]
rs387754	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs388044	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs389429	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs398529	0.97[ASN][1000 genomes]
rs399391	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs399732	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs400186	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs400543	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs401126	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs407288	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs420036	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs421665	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs421918	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs443804	0.93[ASN][1000 genomes]
rs453613	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs563398	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs563417	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6933904	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9358071	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9370827	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9370828	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9370829	1.00[EUR][1000 genomes]
rs9383078	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9383079	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9396604	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9396605	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15797000-15799000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
2	chr6:15797800-15799200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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