Variant report

Variant	rs220888
Chromosome Location	chr6:15810305-15810306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15808858..15810963-chr6:16127657..16129423,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs16876977	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs1887604	1.00[CHB][hapmap]
rs1927578	1.00[CHB][hapmap]
rs220889	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs364837	0.87[AMR][1000 genomes]
rs372993	0.88[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs378646	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs387754	1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs388044	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs389429	1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs398529	0.87[AMR][1000 genomes]
rs399391	1.00[CHB][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs399732	1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs400186	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs400543	1.00[CHB][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs401126	1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs407288	1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs420036	1.00[EUR][1000 genomes]
rs420048	1.00[EUR][1000 genomes]
rs421665	1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs421918	1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs441539	0.89[CHB][hapmap]
rs453613	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs563398	1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs563417	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6933904	1.00[CHB][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9358071	1.00[EUR][1000 genomes]
rs9370827	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs9370828	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs9370829	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9383075	1.00[CHB][hapmap]
rs9383076	1.00[CHB][hapmap]
rs9383078	1.00[CHB][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9383079	1.00[CHB][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9396604	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs9396605	1.00[EUR][1000 genomes]
rs9396606	0.85[JPT][hapmap]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15800400-15816200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:15809800-15814800	Enhancers	Fetal Brain Male	brain
3	chr6:15810200-15810400	Enhancers	Fetal Muscle Trunk	muscle

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