Variant report

Variant	rs1887604
Chromosome Location	chr6:15754758-15754759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15751973..15755914-chr6:16127948..16130980,5	MCF-7	breast:
2	chr6:15753115..15755889-chr6:16132034..16133691,2	K562	blood:
3	chr6:15753906..15756053-chr6:16127831..16129669,2	K562	blood:
4	chr6:15740904..15747364-chr6:15754114..15758056,5	K562	blood:
5	chr6:15750377..15752176-chr6:15753133..15755816,2	K562	blood:
6	chr6:15745202..15755569-chr6:16127641..16133691,11	K562	blood:
7	chr6:15749337..15756995-chr6:16127743..16131944,10	MCF-7	breast:
8	chr6:15691225..15691779-chr6:15754462..15755009,2	MCF-7	breast:
9	chr6:15743873..15748458-chr6:15751737..15757129,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11759386	0.89[ASN][1000 genomes]
rs16876927	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16876933	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16876977	1.00[CHB][hapmap];0.88[AMR][1000 genomes]
rs1927573	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1927574	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1927578	1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220888	1.00[CHB][hapmap]
rs372993	0.84[CHB][hapmap]
rs374876	0.98[ASN][1000 genomes]
rs387754	1.00[CHB][hapmap]
rs388044	1.00[CHB][hapmap]
rs389429	1.00[CHB][hapmap]
rs399391	1.00[CHB][hapmap]
rs399732	1.00[CHB][hapmap]
rs400543	1.00[CHB][hapmap]
rs401126	1.00[CHB][hapmap]
rs407288	1.00[CHB][hapmap]
rs421665	1.00[CHB][hapmap]
rs421918	1.00[CHB][hapmap]
rs441539	0.85[CHB][hapmap];0.97[ASN][1000 genomes]
rs563398	1.00[CHB][hapmap]
rs6933904	1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs9349987	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9358068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9358071	0.88[AMR][1000 genomes]
rs9367881	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9370827	1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs9370828	1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs9370829	0.81[AMR][1000 genomes]
rs9383075	1.00[CHB][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9383076	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9383077	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9383078	1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs9383079	1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs9396602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9396604	1.00[CHB][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15746000-15755200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:15753800-15756400	Enhancers	NHDF-Ad	bronchial
3	chr6:15754000-15755400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:15754200-15755600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:15754400-15754800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:15754400-15754800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:15754400-15755000	Enhancers	K562	blood
8	chr6:15754400-15755400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:15754400-15755400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:15754400-15755400	Enhancers	Esophagus	oesophagus
11	chr6:15754400-15756600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:15754600-15755000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:15754600-15755000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:15754600-15755400	Enhancers	Pancreas	Pancrea
15	chr6:15754600-15756400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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