Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:15740904..15747364-chr6:15754114..15758056,5	K562	blood:
2	chr6:15749337..15756995-chr6:16127743..16131944,10	MCF-7	breast:
3	chr6:15755559..15757788-chr6:15768543..15770822,3	K562	blood:
4	chr6:15743873..15748458-chr6:15751737..15757129,6	MCF-7	breast:
5	chr6:15745864..15748782-chr6:15755149..15758056,3	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11759386	0.89[ASN][1000 genomes]
rs16876927	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16876933	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16876977	0.88[AMR][1000 genomes]
rs1887604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927573	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1927574	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1927578	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs374876	0.98[ASN][1000 genomes]
rs441539	0.97[ASN][1000 genomes]
rs6933904	0.83[AMR][1000 genomes]
rs9349987	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9358071	0.88[AMR][1000 genomes]
rs9367881	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9370827	0.83[AMR][1000 genomes]
rs9370828	0.83[AMR][1000 genomes]
rs9370829	0.81[AMR][1000 genomes]
rs9383075	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9383076	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9383077	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9383078	0.83[AMR][1000 genomes]
rs9383079	0.83[AMR][1000 genomes]
rs9396602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9396604	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15755400-15758800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:15755400-15759000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:15755400-15760000	Weak transcription	Pancreas	Pancrea
4	chr6:15756200-15763600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:15756800-15758800	Weak transcription	Liver	Liver

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