Variant report

Variant	rs9383077
Chromosome Location	chr6:15766120-15766121
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11759386	0.88[ASN][1000 genomes]
rs16876927	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16876933	0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16876977	0.83[AMR][1000 genomes]
rs1887604	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1927573	0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1927574	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1927578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs374876	0.97[ASN][1000 genomes]
rs441539	0.98[ASN][1000 genomes]
rs9349987	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9358068	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9358071	0.83[AMR][1000 genomes]
rs9367881	0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9370829	0.87[AMR][1000 genomes]
rs9383075	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9383076	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9396602	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2762581	chr6:15763793-15774802	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv518098	chr6:15764675-15771988	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15759200-15770000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:15762200-15782000	Weak transcription	Pancreas	Pancrea
3	chr6:15764400-15768800	Weak transcription	K562	blood
4	chr6:15764600-15766200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:15764800-15770200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:15765000-15770000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:15765000-15771000	Weak transcription	Gastric	stomach
8	chr6:15765600-15769200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:15766000-15766600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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