Variant report

Variant	rs11753572
Chromosome Location	chr6:27575565-27575566
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27575261..27576814-chr6:27580561..27582554,2	K562	blood:
2	chr6:27574261..27577118-chr6:27777280..27778871,2	K562	blood:
3	chr6:27573292..27575070-chr6:27575165..27577437,2	K562	blood:

Variant related genes	Relation type
ENSG00000203813	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10946941	1.00[ASN][1000 genomes]
rs11750956	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11751859	1.00[ASN][1000 genomes]
rs11753029	1.00[ASN][1000 genomes]
rs11754166	1.00[ASN][1000 genomes]
rs11756458	1.00[ASN][1000 genomes]
rs11757216	1.00[ASN][1000 genomes]
rs11757320	1.00[ASN][1000 genomes]
rs11757748	1.00[ASN][1000 genomes]
rs11961333	1.00[ASN][1000 genomes]
rs11962403	1.00[ASN][1000 genomes]
rs11966553	1.00[ASN][1000 genomes]
rs11967759	1.00[ASN][1000 genomes]
rs11970095	1.00[ASN][1000 genomes]
rs11970451	1.00[ASN][1000 genomes]
rs61025649	1.00[ASN][1000 genomes]
rs6933702	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73738797	1.00[ASN][1000 genomes]
rs7743306	1.00[ASN][1000 genomes]
rs7744248	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv830617	chr6:27424769-27598595	Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1030256	chr6:27477726-27605842	Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv1025862	chr6:27480227-27605321	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv1017347	chr6:27483816-27605842	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv1025572	chr6:27487852-27604454	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv538167	chr6:27487852-27604454	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv883509	chr6:27492906-27586181	Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
9	nsv1018107	chr6:27503525-27596736	Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
10	nsv538168	chr6:27503525-27596736	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
11	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
12	nsv1023673	chr6:27570731-27688782	Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27570600-27576800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:27573800-27576800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:27574000-27576800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:27574000-27578800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:27574200-27576200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:27574200-27576200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:27574200-27576200	Weak transcription	HMEC	breast
8	chr6:27574200-27576200	Weak transcription	NHEK	skin
9	chr6:27574200-27576400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:27574200-27576600	Weak transcription	Hela-S3	cervix
11	chr6:27574200-27576600	Weak transcription	HepG2	liver
12	chr6:27574200-27576800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr6:27574200-27577000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:27574200-27577000	Weak transcription	Osteobl	bone
15	chr6:27574400-27576600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:27574400-27576800	Weak transcription	K562	blood
17	chr6:27574400-27577000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr6:27574400-27577000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr6:27574600-27576800	Weak transcription	A549	lung

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