Variant report

Variant	rs10946941
Chromosome Location	chr6:27610599-27610600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:27608258..27610952-chr6:27614931..27616951,2	K562	blood:
2	chr6:27439118..27441039-chr6:27609701..27612516,2	K562	blood:

Variant related genes	Relation type
ENSG00000096654	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11750956	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751859	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753029	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753572	1.00[ASN][1000 genomes]
rs11754166	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756458	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757320	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757748	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11961333	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962403	1.00[ASN][1000 genomes]
rs11963773	0.85[AMR][1000 genomes]
rs11963780	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11963925	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11966553	1.00[ASN][1000 genomes]
rs11966565	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11967759	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970095	1.00[ASN][1000 genomes]
rs11970451	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57433313	0.85[AMR][1000 genomes]
rs61025649	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908615	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6933702	1.00[ASN][1000 genomes]
rs73384331	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73385109	0.85[AMR][1000 genomes]
rs73385150	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73385153	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73389017	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73389037	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73389064	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7743306	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744248	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv1023673	chr6:27570731-27688782	Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
5	nsv1031337	chr6:27596676-27734884	Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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