Variant report

Variant	rs73389017
Chromosome Location	chr6:27688854-27688855
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27686786..27690624-chr6:27717358..27721129,5	K562	blood:
2	chr6:27100798..27103607-chr6:27688775..27690811,2	K562	blood:
3	chr6:27687163..27689366-chr6:27693364..27696456,4	K562	blood:
4	chr6:27687897..27691780-chr6:27691811..27694513,3	MCF-7	breast:
5	chr6:27665264..27666796-chr6:27688059..27690362,2	K562	blood:
6	chr6:27660493..27662208-chr6:27687324..27689056,2	MCF-7	breast:
7	chr6:27658926..27663446-chr6:27685398..27690588,6	K562	blood:
8	chr6:27684698..27689044-chr6:27689656..27693289,4	K562	blood:
9	chr6:27659151..27662876-chr6:27687364..27691190,4	K562	blood:
10	chr6:27114795..27117088-chr6:27688794..27690487,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000184825	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000265565	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10946941	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11963780	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11963925	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11966565	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968469	1.00[ASN][1000 genomes]
rs11970451	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56002038	1.00[ASN][1000 genomes]
rs59199903	1.00[ASN][1000 genomes]
rs60339576	1.00[ASN][1000 genomes]
rs61025649	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6901437	1.00[ASN][1000 genomes]
rs6901712	1.00[ASN][1000 genomes]
rs6906904	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906980	1.00[ASN][1000 genomes]
rs6908615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915101	1.00[ASN][1000 genomes]
rs6936952	1.00[ASN][1000 genomes]
rs6938018	1.00[ASN][1000 genomes]
rs73384331	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73385150	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73385153	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73389037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73389064	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73389068	1.00[ASN][1000 genomes]
rs7742752	1.00[ASN][1000 genomes]
rs7743306	0.90[EUR][1000 genomes]
rs9468227	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
4	nsv1031337	chr6:27596676-27734884	Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	nsv601204	chr6:27655564-27689502	Strong transcription Active TSS Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv601205	chr6:27656255-27730064	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	esv3327708	chr6:27683503-27692934	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27662800-27689000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:27678800-27689000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:27681600-27692200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:27687800-27689800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:27688400-27689000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:27688400-27689200	Enhancers	HMEC	breast
7	chr6:27688400-27689600	Flanking Active TSS	NHEK	skin
8	chr6:27688600-27689400	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr6:27688600-27689400	Flanking Active TSS	HepG2	liver
10	chr6:27688600-27689600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:27688600-27689600	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr6:27688600-27689600	Flanking Active TSS	GM12878-XiMat	blood
13	chr6:27688600-27689800	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr6:27688600-27689800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:27688600-27690000	Active TSS	H9 Cell Line	embryonic stem cell
16	chr6:27688600-27690000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:27688600-27690000	Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr6:27688600-27690000	Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr6:27688600-27690000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:27688600-27690200	Active TSS	iPS-18 Cell Line	embryonic stem cell
21	chr6:27688800-27689000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:27688800-27689200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:27688800-27689200	Active TSS	K562	blood
24	chr6:27688800-27689400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:27688800-27689600	Active TSS	iPS-15b Cell Line	embryonic stem cell
26	chr6:27688800-27689600	Active TSS	A549	lung
27	chr6:27688800-27689800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:27688800-27690000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
29	chr6:27688800-27690000	Active TSS	H1 Cell Line	embryonic stem cell

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