Variant report

Variant	rs6906980
Chromosome Location	chr6:27743131-27743132
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27114542..27117845-chr6:27741589..27745932,6	K562	blood:
2	chr6:27653465..27656102-chr6:27740718..27743462,2	K562	blood:
3	chr6:27113969..27118292-chr6:27739764..27746039,7	K562	blood:

Variant related genes	Relation type
ENSG00000265565	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000184825	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11966565	1.00[ASN][1000 genomes]
rs11968469	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs200466	0.81[EUR][1000 genomes]
rs200469	0.81[EUR][1000 genomes]
rs200471	0.81[EUR][1000 genomes]
rs200473	0.81[EUR][1000 genomes]
rs56002038	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59199903	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60339576	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs666846	0.81[EUR][1000 genomes]
rs6901437	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901712	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906904	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908615	1.00[ASN][1000 genomes]
rs6915101	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936952	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938018	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73384331	1.00[ASN][1000 genomes]
rs73389017	1.00[ASN][1000 genomes]
rs73389037	1.00[ASN][1000 genomes]
rs73389068	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7742752	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9468227	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
3	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
4	nsv1017440	chr6:27734824-27864277	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	370 gene(s)	inside rSNPs	diseases
5	nsv1022173	chr6:27734824-27959408	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27740200-27745200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:27740400-27745200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:27740800-27743200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:27741000-27743400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:27741200-27743600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:27741200-27744600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:27741400-27744400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:27741800-27743200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:27741800-27744600	Weak transcription	A549	lung
10	chr6:27741800-27744600	Enhancers	K562	blood
11	chr6:27742200-27744400	Weak transcription	GM12878-XiMat	blood
12	chr6:27742200-27744800	Weak transcription	HepG2	liver
13	chr6:27742400-27743200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:27742400-27743400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:27743000-27744000	Enhancers	Fetal Intestine Large	intestine
16	chr6:27743000-27744000	Enhancers	Fetal Intestine Small	intestine
17	chr6:27743000-27744000	Enhancers	Rectal Mucosa Donor 31	rectum

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