Variant report

Variant	rs73384331
Chromosome Location	chr6:27751121-27751122
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27114055..27115992-chr6:27750926..27753050,2	K562	blood:
2	chr6:27113391..27118282-chr6:27750926..27755180,4	K562	blood:
3	chr6:27750078..27752757-chr6:27753756..27756420,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000265565	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000184825	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10946941	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11963780	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11963925	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11966565	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968469	1.00[ASN][1000 genomes]
rs11970451	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56002038	1.00[ASN][1000 genomes]
rs59199903	1.00[ASN][1000 genomes]
rs60339576	1.00[ASN][1000 genomes]
rs61025649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6901437	1.00[ASN][1000 genomes]
rs6901712	1.00[ASN][1000 genomes]
rs6906904	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906980	1.00[ASN][1000 genomes]
rs6908615	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915101	1.00[ASN][1000 genomes]
rs6936952	1.00[ASN][1000 genomes]
rs6938018	1.00[ASN][1000 genomes]
rs73385150	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73385153	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73389017	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73389037	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73389064	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73389068	1.00[ASN][1000 genomes]
rs7742752	1.00[ASN][1000 genomes]
rs7743306	0.90[EUR][1000 genomes]
rs9468227	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
3	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
4	nsv1017440	chr6:27734824-27864277	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	370 gene(s)	inside rSNPs	diseases
5	nsv1022173	chr6:27734824-27959408	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
6	nsv1017057	chr6:27745777-27789683	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	125 gene(s)	inside rSNPs	diseases
7	nsv981120	chr6:27746371-27751747	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	n/a
8	nsv883512	chr6:27748631-27969004	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27745600-27753200	Weak transcription	HepG2	liver
2	chr6:27748800-27754600	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr6:27750000-27751200	Enhancers	Fetal Intestine Small	intestine
4	chr6:27750000-27751600	Enhancers	K562	blood
5	chr6:27750200-27751400	Enhancers	Fetal Intestine Large	intestine
6	chr6:27751000-27751200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum

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