Variant report

Variant	rs7744248
Chromosome Location	chr6:27421221-27421222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:27414265..27420654-chr6:27420859..27426179,12	K562	blood:
2	chr6:27420165..27423011-chr6:27423829..27426200,3	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10946941	1.00[ASN][1000 genomes]
rs11750956	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751859	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753029	1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753248	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753483	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753572	1.00[ASN][1000 genomes]
rs11754166	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756458	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757216	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757320	1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757748	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11961333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962403	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11965377	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11966553	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966985	1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967073	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967759	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969536	1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970095	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970261	1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2893912	1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34979454	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3800316	1.00[CHB][hapmap]
rs6933702	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs73738797	1.00[ASN][1000 genomes]
rs7743306	1.00[ASN][1000 genomes]
rs7759741	1.00[CHB][hapmap]
rs9969094	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	nsv1031803	chr6:27355881-27423655	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv538166	chr6:27355881-27423655	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27412600-27438000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:27413600-27425600	ZNF genes & repeats	Fetal Brain Female	brain
3	chr6:27414000-27425600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
4	chr6:27414200-27430600	ZNF genes & repeats	Liver	Liver
5	chr6:27414400-27432000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
6	chr6:27415400-27425400	ZNF genes & repeats	Brain Germinal Matrix	brain
7	chr6:27415400-27425800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
8	chr6:27415400-27430000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:27415400-27438600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:27415600-27425200	ZNF genes & repeats	Fetal Lung	lung
11	chr6:27415600-27425400	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
12	chr6:27415600-27425400	ZNF genes & repeats	HSMMtube	muscle
13	chr6:27415600-27425600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:27415600-27425600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
15	chr6:27415600-27425600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:27415600-27427400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
17	chr6:27415600-27429800	ZNF genes & repeats	Dnd41	blood
18	chr6:27415600-27430000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:27415600-27430000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:27415600-27430200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
21	chr6:27415800-27424800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
22	chr6:27415800-27425800	ZNF genes & repeats	Primary T cells from cord blood	blood
23	chr6:27415800-27430000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:27415800-27430200	ZNF genes & repeats	Primary B cells from cord blood	blood
25	chr6:27415800-27434000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
26	chr6:27416000-27425400	ZNF genes & repeats	Fetal Muscle Leg	muscle
27	chr6:27416000-27432400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:27416200-27424800	ZNF genes & repeats	Adipose Nuclei	Adipose
29	chr6:27416200-27425200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
30	chr6:27416200-27425600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:27416200-27425800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
32	chr6:27416200-27432600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:27416400-27422800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
34	chr6:27416400-27425200	ZNF genes & repeats	Psoas Muscle	Psoas
35	chr6:27416400-27428000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
36	chr6:27416600-27429200	ZNF genes & repeats	HSMM	muscle
37	chr6:27416800-27425000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:27416800-27425200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
39	chr6:27416800-27429400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
40	chr6:27416800-27430600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
41	chr6:27417200-27425600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:27417200-27432600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr6:27417400-27422800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
44	chr6:27417400-27425200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:27417400-27425400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
46	chr6:27417400-27427400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
47	chr6:27417600-27423000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
48	chr6:27417600-27425400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
49	chr6:27417600-27425600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:27417600-27427000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links