Variant report

Variant	rs11754328
Chromosome Location	chr6:70974980-70974981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11752666	0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs11753364	0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs11758956	0.81[EUR][1000 genomes]
rs1321059	0.91[JPT][hapmap]
rs16868814	0.93[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16868815	1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16868818	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16868820	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16868822	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2072650	0.91[JPT][hapmap];0.81[EUR][1000 genomes]
rs2274584	0.91[JPT][hapmap]
rs3737010	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3793060	0.81[EUR][1000 genomes]
rs3793065	0.84[JPT][hapmap];0.81[EUR][1000 genomes]
rs3806044	0.84[JPT][hapmap];0.81[EUR][1000 genomes]
rs3806062	0.84[JPT][hapmap];0.81[EUR][1000 genomes]
rs3806063	0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs3806069	0.81[EUR][1000 genomes]
rs3806074	0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs3806076	1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3806089	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3806091	0.90[EUR][1000 genomes]
rs3818326	0.84[JPT][hapmap];0.81[EUR][1000 genomes]
rs3828778	0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs545211	0.90[EUR][1000 genomes]
rs549742	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs603410	0.90[EUR][1000 genomes]
rs607156	0.90[EUR][1000 genomes]
rs617600	0.90[EUR][1000 genomes]
rs617985	0.90[EUR][1000 genomes]
rs638167	0.90[EUR][1000 genomes]
rs6913123	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6914074	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6936355	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs883708	0.85[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv886143	chr6:70968276-70984436	Strong transcription Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70952200-70980400	Weak transcription	Fetal Stomach	stomach
2	chr6:70952200-70990000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:70952600-70980400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:70952800-70989800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:70962000-70983600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:70965200-70991600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:70972800-70978200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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