Variant report

Variant	rs3806076
Chromosome Location	chr6:70954228-70954229
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11752666	0.91[EUR][1000 genomes]
rs11753364	0.91[EUR][1000 genomes]
rs11754328	1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11754354	0.82[EUR][1000 genomes]
rs11756448	0.82[EUR][1000 genomes]
rs11758956	0.91[EUR][1000 genomes]
rs11759148	0.82[EUR][1000 genomes]
rs1321059	0.85[JPT][hapmap]
rs16868814	1.00[CHB][hapmap];0.93[JPT][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16868815	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16868818	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16868820	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16868822	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2072650	0.88[CHB][hapmap];0.92[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2274584	0.85[JPT][hapmap]
rs3737010	1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3793060	0.91[EUR][1000 genomes]
rs3793065	0.91[EUR][1000 genomes]
rs3806038	0.82[EUR][1000 genomes]
rs3806044	0.91[EUR][1000 genomes]
rs3806062	0.91[EUR][1000 genomes]
rs3806063	0.91[EUR][1000 genomes]
rs3806069	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3806074	0.82[CHB][hapmap];0.92[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3806089	1.00[JPT][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs3806091	0.82[EUR][1000 genomes]
rs3818326	0.91[EUR][1000 genomes]
rs3828778	0.89[CHB][hapmap];0.93[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs545211	0.82[EUR][1000 genomes]
rs549742	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs603410	0.82[EUR][1000 genomes]
rs607156	0.82[EUR][1000 genomes]
rs617600	0.82[EUR][1000 genomes]
rs617985	0.82[EUR][1000 genomes]
rs638167	0.82[EUR][1000 genomes]
rs6913123	1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6914074	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6936355	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs883708	1.00[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70931400-70961400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:70952000-70954800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:70952200-70959000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:70952200-70964600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:70952200-70980400	Weak transcription	Fetal Stomach	stomach
6	chr6:70952200-70990000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:70952600-70966600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:70952600-70980400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:70952800-70989800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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