Variant report

Variant	rs11756448
Chromosome Location	chr6:70823481-70823482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:70820813..70823545-chr6:70826168..70828329,2	K562	blood:
2	chr6:70818751..70820425-chr6:70822402..70825212,2	K562	blood:
3	chr6:70820840..70823545-chr6:70826829..70829430,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11752666	0.90[EUR][1000 genomes]
rs11753364	0.90[EUR][1000 genomes]
rs11754354	0.89[CHB][hapmap];1.00[EUR][1000 genomes]
rs11758956	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11759148	0.88[CHB][hapmap];0.83[JPT][hapmap];1.00[EUR][1000 genomes]
rs16868814	0.82[EUR][1000 genomes]
rs16868815	0.82[EUR][1000 genomes]
rs2072650	0.90[EUR][1000 genomes]
rs3763249	1.00[AFR][1000 genomes]
rs3793060	0.90[EUR][1000 genomes]
rs3793065	0.90[EUR][1000 genomes]
rs3806038	0.88[CHB][hapmap];0.83[JPT][hapmap];1.00[EUR][1000 genomes]
rs3806044	0.90[EUR][1000 genomes]
rs3806062	0.90[EUR][1000 genomes]
rs3806063	0.90[EUR][1000 genomes]
rs3806069	0.90[EUR][1000 genomes]
rs3806074	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs3806076	0.82[EUR][1000 genomes]
rs3818326	0.90[EUR][1000 genomes]
rs3828778	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1026836	chr6:70727747-70849014	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv830683	chr6:70743422-70941190	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70818600-70827000	Weak transcription	Fetal Lung	lung
2	chr6:70821000-70823600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:70821200-70823600	Strong transcription	Primary B cells from peripheral blood	blood
4	chr6:70822000-70828600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:70822200-70823600	Enhancers	Brain Germinal Matrix	brain
6	chr6:70822600-70823600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:70823000-70823600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:70823000-70834800	Weak transcription	Pancreas	Pancrea
9	chr6:70823200-70827000	Weak transcription	HSMMtube	muscle
10	chr6:70823200-70829000	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:70823400-70826200	Weak transcription	Primary B cells from cord blood	blood

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