Variant report

Variant	rs3806074
Chromosome Location	chr6:70949678-70949679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:70947947..70949815-chr6:70963737..70966272,2	K562	blood:
2	chr6:70947725..70951615-chr6:71103397..71106109,3	K562	blood:

Variant related genes	Relation type
ENSG00000237643	Chromatin interaction
ENSG00000112280	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11752666	0.84[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11753364	0.84[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11754328	0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs11754354	0.90[EUR][1000 genomes]
rs11756448	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11758956	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11759148	0.90[EUR][1000 genomes]
rs1321059	0.84[JPT][hapmap]
rs16868814	0.82[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16868815	0.82[CHB][hapmap];0.92[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16868818	0.92[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16868820	0.82[CHB][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16868822	0.82[CHB][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2072650	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274584	0.84[JPT][hapmap]
rs3737010	0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs3763249	1.00[AFR][1000 genomes]
rs3793060	1.00[EUR][1000 genomes]
rs3793065	0.82[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3806038	0.90[EUR][1000 genomes]
rs3806044	0.82[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3806062	0.82[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3806063	0.84[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3806069	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3806076	0.82[CHB][hapmap];0.92[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3806089	0.92[JPT][hapmap]
rs3818326	0.82[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3828778	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs549742	0.81[EUR][1000 genomes]
rs6913123	0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs6914074	0.81[EUR][1000 genomes]
rs6936355	0.81[EUR][1000 genomes]
rs883708	0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv934035	chr6:70948905-70950105	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70931400-70961400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:70932600-70951800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:70933000-70951800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:70934400-70951600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:70939000-70951600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:70947000-70950400	Weak transcription	Fetal Stomach	stomach
7	chr6:70949600-70951000	Enhancers	Rectal Mucosa Donor 31	rectum

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