Variant report
| Variant | rs11755692 |
|---|---|
| Chromosome Location | chr6:27071467-27071468 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:27065015..27066548-chr6:27071402..27073747,2 | K562 | blood: | |
| 2 | chr6:27069505..27071907-chr6:27099988..27103425,3 | K562 | blood: | |
| 3 | chr6:27070757..27073840-chr6:27098244..27101974,3 | MCF-7 | breast: | |
| 4 | chr6:27062755..27066396-chr6:27068240..27071755,4 | K562 | blood: | |
| 5 | chr6:27068038..27071892-chr6:27075908..27081186,6 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000124635 | Chromatin interaction |
| ENSG00000196787 | Chromatin interaction |
| ENSG00000222800 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10484393 | 0.84[AFR][1000 genomes] |
| rs11751689 | 0.81[AFR][1000 genomes] |
| rs11753970 | 0.84[AFR][1000 genomes] |
| rs11755181 | 0.81[AFR][1000 genomes] |
| rs11757483 | 0.84[AFR][1000 genomes] |
| rs11758093 | 0.84[AFR][1000 genomes] |
| rs12110621 | 0.84[AFR][1000 genomes] |
| rs12111326 | 0.84[AFR][1000 genomes] |
| rs36002224 | 0.81[AFR][1000 genomes] |
| rs56065824 | 0.81[AFR][1000 genomes] |
| rs56970208 | 0.81[AFR][1000 genomes] |
| rs57331553 | 0.87[AFR][1000 genomes] |
| rs59405634 | 0.87[AFR][1000 genomes] |
| rs59701289 | 0.87[AFR][1000 genomes] |
| rs61050868 | 0.87[AFR][1000 genomes] |
| rs73739539 | 0.81[AFR][1000 genomes] |
| rs73739543 | 0.81[AFR][1000 genomes] |
| rs73739544 | 0.81[AFR][1000 genomes] |
| rs73739551 | 0.87[AFR][1000 genomes] |
| rs73739553 | 0.87[AFR][1000 genomes] |
| rs73739560 | 0.87[AFR][1000 genomes] |
| rs73739565 | 0.87[AFR][1000 genomes] |
| rs73739567 | 0.87[AFR][1000 genomes] |
| rs73739569 | 0.87[AFR][1000 genomes] |
| rs73739601 | 0.84[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948921 | chr6:26556890-27443957 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 472 gene(s) | inside rSNPs | diseases |
| 2 | esv2758038 | chr6:26695219-27095714 | Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 67 gene(s) | inside rSNPs | diseases |
| 3 | esv2759410 | chr6:26695219-27095714 | Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 67 gene(s) | inside rSNPs | diseases |
| 4 | nsv1029124 | chr6:26825468-27109774 | Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 244 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:27070200-27082200 | Weak transcription | K562 | blood |
