Variant report

Variant	rs11755781
Chromosome Location	chr6:117836250-117836251
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:117835641..117837233-chr6:117872340..117873948,2	MCF-7	breast:
2	chr6:117802517..117805478-chr6:117834607..117837473,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164465	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1123836	0.88[EUR][1000 genomes]
rs11755719	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756993	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664604	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12665822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1321808	0.88[EUR][1000 genomes]
rs1321809	0.88[EUR][1000 genomes]
rs1321810	0.88[EUR][1000 genomes]
rs17165	0.89[AMR][1000 genomes]
rs17573446	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17574179	0.88[EUR][1000 genomes]
rs17574269	0.88[EUR][1000 genomes]
rs17575094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17575449	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17635492	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17636431	0.88[EUR][1000 genomes]
rs7453460	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117805200-117851200	Weak transcription	Right Ventricle	heart
2	chr6:117816400-117841400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:117819800-117868800	Weak transcription	Spleen	Spleen
4	chr6:117821600-117868800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:117821800-117843600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:117823200-117868800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:117823200-117869600	Weak transcription	Small Intestine	intestine
8	chr6:117826200-117842600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:117826200-117844800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:117826400-117859800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:117827200-117841600	Weak transcription	Adipose Nuclei	Adipose
12	chr6:117827600-117851200	Weak transcription	Lung	lung
13	chr6:117828000-117836400	Weak transcription	Liver	Liver
14	chr6:117828000-117841400	Weak transcription	Left Ventricle	heart
15	chr6:117828000-117866200	Weak transcription	Esophagus	oesophagus
16	chr6:117828200-117841000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:117828200-117851000	Weak transcription	Right Atrium	heart
18	chr6:117828400-117851600	Weak transcription	NHLF	lung
19	chr6:117832400-117841600	Weak transcription	HUVEC	blood vessel
20	chr6:117833000-117839200	Enhancers	HepG2	liver
21	chr6:117833600-117838000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:117833600-117851600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:117833800-117847000	Weak transcription	NHEK	skin
24	chr6:117833800-117849200	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr6:117834000-117838400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:117834000-117838400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:117834000-117838400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr6:117834000-117840800	Weak transcription	HMEC	breast
29	chr6:117834200-117836800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:117834400-117841400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr6:117834400-117852800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:117834400-117861800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:117834400-117863600	Weak transcription	Gastric	stomach
34	chr6:117834600-117839800	Enhancers	Fetal Intestine Large	intestine
35	chr6:117834800-117836400	Weak transcription	Osteobl	bone
36	chr6:117834800-117837400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:117834800-117841400	Weak transcription	Fetal Stomach	stomach
38	chr6:117834800-117841600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:117834800-117846600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr6:117834800-117851000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr6:117834800-117857400	Weak transcription	Aorta	Aorta
42	chr6:117834800-117860600	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr6:117835000-117837200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:117835000-117837800	Enhancers	Fetal Intestine Small	intestine
45	chr6:117835000-117841600	Weak transcription	Fetal Lung	lung
46	chr6:117835200-117851600	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr6:117835200-117868800	Weak transcription	Colonic Mucosa	Colon
48	chr6:117835400-117836600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr6:117835400-117868800	Weak transcription	Psoas Muscle	Psoas
50	chr6:117835600-117836600	Enhancers	Pancreas	Pancrea

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