Variant report

Variant	rs11756993
Chromosome Location	chr6:117837849-117837850
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:117833098..117835004-chr6:117837097..117839790,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1123836	0.88[EUR][1000 genomes]
rs11755719	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759243	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664604	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12665822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1321808	0.88[EUR][1000 genomes]
rs1321809	0.88[EUR][1000 genomes]
rs1321810	0.88[EUR][1000 genomes]
rs17165	0.89[AMR][1000 genomes]
rs17573446	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17574179	0.88[EUR][1000 genomes]
rs17574269	0.88[EUR][1000 genomes]
rs17575094	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17575449	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17635492	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17636431	0.88[EUR][1000 genomes]
rs7453460	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv3474232	chr6:117837728-117839919	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3474233	chr6:117837728-117839919	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117805200-117851200	Weak transcription	Right Ventricle	heart
2	chr6:117816400-117841400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:117819800-117868800	Weak transcription	Spleen	Spleen
4	chr6:117821600-117868800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:117821800-117843600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:117823200-117868800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:117823200-117869600	Weak transcription	Small Intestine	intestine
8	chr6:117826200-117842600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:117826200-117844800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:117826400-117859800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:117827200-117841600	Weak transcription	Adipose Nuclei	Adipose
12	chr6:117827600-117851200	Weak transcription	Lung	lung
13	chr6:117828000-117841400	Weak transcription	Left Ventricle	heart
14	chr6:117828000-117866200	Weak transcription	Esophagus	oesophagus
15	chr6:117828200-117841000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr6:117828200-117851000	Weak transcription	Right Atrium	heart
17	chr6:117828400-117851600	Weak transcription	NHLF	lung
18	chr6:117832400-117841600	Weak transcription	HUVEC	blood vessel
19	chr6:117833000-117839200	Enhancers	HepG2	liver
20	chr6:117833600-117838000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:117833600-117851600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:117833800-117847000	Weak transcription	NHEK	skin
23	chr6:117833800-117849200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr6:117834000-117838400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:117834000-117838400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:117834000-117838400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr6:117834000-117840800	Weak transcription	HMEC	breast
28	chr6:117834400-117841400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr6:117834400-117852800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:117834400-117861800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:117834400-117863600	Weak transcription	Gastric	stomach
32	chr6:117834600-117839800	Enhancers	Fetal Intestine Large	intestine
33	chr6:117834800-117841400	Weak transcription	Fetal Stomach	stomach
34	chr6:117834800-117841600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:117834800-117846600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr6:117834800-117851000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr6:117834800-117857400	Weak transcription	Aorta	Aorta
38	chr6:117834800-117860600	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr6:117835000-117841600	Weak transcription	Fetal Lung	lung
40	chr6:117835200-117851600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr6:117835200-117868800	Weak transcription	Colonic Mucosa	Colon
42	chr6:117835400-117868800	Weak transcription	Psoas Muscle	Psoas
43	chr6:117835600-117841000	Weak transcription	HSMM	muscle
44	chr6:117835600-117852600	Weak transcription	HSMMtube	muscle
45	chr6:117835800-117838600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr6:117835800-117841000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr6:117835800-117857600	Weak transcription	Placenta	Placenta
48	chr6:117836600-117838600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr6:117836600-117861800	Weak transcription	Pancreas	Pancrea
50	chr6:117836600-117869600	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links