Variant report

Variant	rs12664604
Chromosome Location	chr6:117845424-117845425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:117802429..117805103-chr6:117843667..117848764,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164465	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11755719	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755781	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756993	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759243	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12665822	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17575094	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17575449	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117805200-117851200	Weak transcription	Right Ventricle	heart
2	chr6:117819800-117868800	Weak transcription	Spleen	Spleen
3	chr6:117821600-117868800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:117823200-117868800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:117823200-117869600	Weak transcription	Small Intestine	intestine
6	chr6:117826400-117859800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:117827600-117851200	Weak transcription	Lung	lung
8	chr6:117828000-117866200	Weak transcription	Esophagus	oesophagus
9	chr6:117828200-117851000	Weak transcription	Right Atrium	heart
10	chr6:117828400-117851600	Weak transcription	NHLF	lung
11	chr6:117833600-117851600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:117833800-117847000	Weak transcription	NHEK	skin
13	chr6:117833800-117849200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr6:117834400-117852800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:117834400-117861800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:117834400-117863600	Weak transcription	Gastric	stomach
17	chr6:117834800-117846600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr6:117834800-117851000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:117834800-117857400	Weak transcription	Aorta	Aorta
20	chr6:117834800-117860600	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr6:117835200-117851600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr6:117835200-117868800	Weak transcription	Colonic Mucosa	Colon
23	chr6:117835400-117868800	Weak transcription	Psoas Muscle	Psoas
24	chr6:117835600-117852600	Weak transcription	HSMMtube	muscle
25	chr6:117835800-117857600	Weak transcription	Placenta	Placenta
26	chr6:117836600-117861800	Weak transcription	Pancreas	Pancrea
27	chr6:117836600-117869600	Weak transcription	Stomach Mucosa	stomach
28	chr6:117837200-117860600	Weak transcription	Fetal Muscle Leg	muscle
29	chr6:117838600-117849800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:117838600-117869000	Weak transcription	Ovary	ovary
31	chr6:117839000-117851400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:117840800-117846200	Strong transcription	HMEC	breast
33	chr6:117841000-117849000	Weak transcription	Liver	Liver
34	chr6:117841200-117848000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr6:117842000-117846000	Weak transcription	HSMM	muscle
36	chr6:117842000-117851200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr6:117842000-117851200	Weak transcription	Fetal Intestine Small	intestine
38	chr6:117842000-117854200	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr6:117842000-117860600	Weak transcription	Fetal Stomach	stomach
40	chr6:117842200-117848000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:117842200-117852600	Weak transcription	Left Ventricle	heart
42	chr6:117842400-117851200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:117842400-117851800	Weak transcription	Adipose Nuclei	Adipose
44	chr6:117842800-117866200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:117843600-117848200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr6:117843600-117853000	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr6:117844000-117850800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr6:117844000-117853000	Weak transcription	Fetal Intestine Large	intestine
49	chr6:117844000-117853200	Weak transcription	Duodenum Mucosa	Duodenum
50	chr6:117844200-117846200	Weak transcription	Osteobl	bone

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