Variant report

Variant	rs11755805
Chromosome Location	chr6:164087931-164087932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164081712..164084743-chr6:164086465..164089589,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12526417	0.83[AFR][1000 genomes]
rs4709738	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2758092	chr6:163992064-164161903	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2759490	chr6:163992064-164161903	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1019107	chr6:164056423-164144164	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv3442319	chr6:164084362-164088660	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv3432872	chr6:164085162-164087960	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11755805	QKI	cis	cerebellum	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164057200-164092400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:164083000-164088200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:164083000-164088200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:164083200-164088000	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:164083200-164088400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:164083800-164088000	Weak transcription	Brain Substantia Nigra	brain
7	chr6:164084400-164088000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:164085400-164088200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:164085600-164092000	Enhancers	Brain Germinal Matrix	brain
10	chr6:164086200-164092800	Enhancers	Primary B cells from peripheral blood	blood
11	chr6:164086400-164091000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:164086800-164089200	Weak transcription	Fetal Kidney	kidney
13	chr6:164086800-164089600	Enhancers	Fetal Brain Male	brain
14	chr6:164087000-164088400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:164087000-164088600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr6:164087000-164089400	Enhancers	Fetal Muscle Leg	muscle
17	chr6:164087000-164089800	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr6:164087200-164088600	Enhancers	Primary B cells from cord blood	blood
19	chr6:164087600-164088200	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr6:164087600-164088400	Enhancers	Fetal Lung	lung
21	chr6:164087600-164089800	Enhancers	Primary hematopoietic stem cells	blood
22	chr6:164087600-164090200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:164087800-164088000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:164087800-164088200	Enhancers	GM12878-XiMat	blood
25	chr6:164087800-164088400	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr6:164087800-164089000	Enhancers	Brain Angular Gyrus	brain
27	chr6:164087800-164089000	Enhancers	Fetal Stomach	stomach
28	chr6:164087800-164089400	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr6:164087800-164089400	Enhancers	Adipose Nuclei	Adipose
30	chr6:164087800-164089400	Enhancers	Brain Anterior Caudate	brain
31	chr6:164087800-164089400	Enhancers	Fetal Muscle Trunk	muscle
32	chr6:164087800-164089800	Enhancers	Brain Cingulate Gyrus	brain
33	chr6:164087800-164089800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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