Variant report

Variant	rs4709738
Chromosome Location	chr6:164088863-164088864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164081712..164084743-chr6:164086465..164089589,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11755805	0.94[ASN][1000 genomes]
rs7742763	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7756747	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7763577	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9347774	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2758092	chr6:163992064-164161903	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2759490	chr6:163992064-164161903	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1019107	chr6:164056423-164144164	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164057200-164092400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:164085600-164092000	Enhancers	Brain Germinal Matrix	brain
3	chr6:164086200-164092800	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:164086400-164091000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:164086800-164089200	Weak transcription	Fetal Kidney	kidney
6	chr6:164086800-164089600	Enhancers	Fetal Brain Male	brain
7	chr6:164087000-164089400	Enhancers	Fetal Muscle Leg	muscle
8	chr6:164087000-164089800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:164087600-164089800	Enhancers	Primary hematopoietic stem cells	blood
10	chr6:164087600-164090200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:164087800-164089000	Enhancers	Brain Angular Gyrus	brain
12	chr6:164087800-164089000	Enhancers	Fetal Stomach	stomach
13	chr6:164087800-164089400	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr6:164087800-164089400	Enhancers	Adipose Nuclei	Adipose
15	chr6:164087800-164089400	Enhancers	Brain Anterior Caudate	brain
16	chr6:164087800-164089400	Enhancers	Fetal Muscle Trunk	muscle
17	chr6:164087800-164089800	Enhancers	Brain Cingulate Gyrus	brain
18	chr6:164087800-164089800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr6:164088000-164089200	Enhancers	Primary T cells fromperipheralblood	blood
20	chr6:164088000-164089200	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr6:164088000-164089400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:164088000-164089400	Enhancers	Brain Substantia Nigra	brain
23	chr6:164088000-164089600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:164088000-164089600	Enhancers	Brain Hippocampus Middle	brain
25	chr6:164088200-164089000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr6:164088200-164089400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
27	chr6:164088200-164089400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:164088200-164089600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:164088200-164089600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:164088200-164089600	Enhancers	Primary T cells from cord blood	blood
31	chr6:164088200-164089800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:164088400-164089000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr6:164088400-164089200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr6:164088400-164089200	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr6:164088400-164089200	Weak transcription	Right Ventricle	heart
36	chr6:164088400-164089400	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr6:164088400-164089400	Enhancers	Fetal Thymus	thymus
38	chr6:164088400-164093000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr6:164088600-164089000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
40	chr6:164088600-164089200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:164088600-164089200	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr6:164088600-164089200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:164088600-164089400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:164088600-164089400	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr6:164088600-164089600	Enhancers	K562	blood
46	chr6:164088600-164089800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:164088600-164089800	Flanking Active TSS	Primary B cells from cord blood	blood
48	chr6:164088800-164089000	Enhancers	Stomach Smooth Muscle	stomach
49	chr6:164088800-164089000	Enhancers	GM12878-XiMat	blood
50	chr6:164088800-164089200	Enhancers	Placenta	Placenta

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