Variant report

Variant	rs11756890
Chromosome Location	chr6:145141871-145141872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:145137078..145138640-chr6:145140565..145142974,2	K562	blood:
2	chr6:145120568..145122991-chr6:145140332..145141910,2	K562	blood:
3	chr6:145141754..145144576-chr6:145155600..145157131,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10499235	0.87[YRI][hapmap];0.87[AFR][1000 genomes]
rs10499238	0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11155377	1.00[CEU][hapmap];0.87[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17194806	0.87[AFR][1000 genomes]
rs2297848	0.84[ASN][1000 genomes]
rs28709168	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41285041	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4571589	1.00[YRI][hapmap]
rs56039647	0.84[ASN][1000 genomes]
rs56104121	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56383646	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57793865	0.91[AFR][1000 genomes]
rs57997212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59277223	0.91[AFR][1000 genomes]
rs59324373	0.84[ASN][1000 genomes]
rs60747321	0.95[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs61088924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900570	0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6901197	1.00[YRI][hapmap]
rs6905730	0.91[AFR][1000 genomes]
rs6905731	0.91[AFR][1000 genomes]
rs73596560	0.84[ASN][1000 genomes]
rs7748226	0.87[YRI][hapmap];0.91[AFR][1000 genomes]
rs7755539	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7759754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761905	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390222	0.91[AFR][1000 genomes]
rs9390228	0.91[AFR][1000 genomes]
rs9399503	0.87[YRI][hapmap];0.91[AFR][1000 genomes]
rs9399505	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9403611	1.00[YRI][hapmap];0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv886740	chr6:145105354-145199259	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv886741	chr6:145123326-145165362	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145084000-145155800	Weak transcription	Right Ventricle	heart
2	chr6:145091000-145145000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:145099600-145165800	Weak transcription	Small Intestine	intestine
4	chr6:145100400-145145000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:145115200-145155000	Weak transcription	Esophagus	oesophagus
6	chr6:145115800-145156600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:145116000-145142000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:145116000-145148600	Weak transcription	Placenta	Placenta
9	chr6:145116000-145154800	Weak transcription	Spleen	Spleen
10	chr6:145116000-145155800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:145116200-145154400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr6:145116400-145155600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:145116400-145169000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr6:145117400-145175200	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr6:145117600-145148400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:145119200-145155800	Weak transcription	Pancreas	Pancrea
17	chr6:145120000-145145800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:145120000-145148800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:145120000-145155000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr6:145120200-145145800	Weak transcription	Fetal Intestine Small	intestine
21	chr6:145120200-145145800	Weak transcription	Fetal Stomach	stomach
22	chr6:145120200-145148400	Weak transcription	Ovary	ovary
23	chr6:145120200-145156400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr6:145120400-145145800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:145120600-145148200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr6:145120600-145148400	Weak transcription	Duodenum Mucosa	Duodenum
27	chr6:145120600-145148800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr6:145120600-145154800	Weak transcription	Aorta	Aorta
29	chr6:145120800-145145000	Weak transcription	HSMMtube	muscle
30	chr6:145120800-145148400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr6:145120800-145155800	Weak transcription	Thymus	Thymus
32	chr6:145126000-145148200	Weak transcription	HUVEC	blood vessel
33	chr6:145126600-145169400	Weak transcription	Stomach Mucosa	stomach
34	chr6:145127000-145147800	Weak transcription	Fetal Muscle Trunk	muscle
35	chr6:145127000-145148600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr6:145127600-145148400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:145130600-145163800	Weak transcription	NHEK	skin
38	chr6:145130800-145147400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:145130800-145156800	Weak transcription	Osteobl	bone
40	chr6:145130800-145172200	Weak transcription	NH-A	brain
41	chr6:145131000-145148600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:145131000-145156600	Weak transcription	NHLF	lung
43	chr6:145131000-145157000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr6:145132400-145147800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:145132800-145145200	Weak transcription	Fetal Thymus	thymus
46	chr6:145132800-145155600	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr6:145133600-145144800	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr6:145133800-145144400	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr6:145135200-145149000	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr6:145135400-145148200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links