Variant report

Variant	rs7755539
Chromosome Location	chr6:145130276-145130277
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10192	0.85[JPT][hapmap]
rs10499235	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1111807	0.92[JPT][hapmap]
rs1111808	0.92[JPT][hapmap]
rs11155377	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs11756890	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs17074175	0.85[CEU][hapmap]
rs17194806	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36094852	0.85[EUR][1000 genomes]
rs4143942	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4571589	1.00[YRI][hapmap]
rs56383646	0.91[AFR][1000 genomes]
rs57793865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57997212	0.91[AFR][1000 genomes]
rs59277223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60747321	0.87[AFR][1000 genomes]
rs61088924	0.91[AFR][1000 genomes]
rs6901197	1.00[YRI][hapmap]
rs6905730	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6905731	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748226	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7759754	1.00[ASW][hapmap];0.83[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7761155	1.00[ASW][hapmap];0.83[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7761905	0.91[AFR][1000 genomes]
rs9390222	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9390228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9390235	0.92[JPT][hapmap]
rs9399503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403611	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403617	0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv886740	chr6:145105354-145199259	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv886741	chr6:145123326-145165362	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145084000-145155800	Weak transcription	Right Ventricle	heart
2	chr6:145085800-145134800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:145089600-145138400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:145090000-145136800	Weak transcription	Fetal Heart	heart
5	chr6:145091000-145145000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:145094400-145136800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:145099600-145165800	Weak transcription	Small Intestine	intestine
8	chr6:145100000-145137600	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr6:145100400-145133200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr6:145100400-145145000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr6:145110400-145137000	Strong transcription	Primary B cells from cord blood	blood
12	chr6:145114200-145135600	Strong transcription	Primary B cells from peripheral blood	blood
13	chr6:145115200-145155000	Weak transcription	Esophagus	oesophagus
14	chr6:145115600-145131400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:145115600-145134800	Weak transcription	Lung	lung
16	chr6:145115800-145156600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:145116000-145142000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr6:145116000-145148600	Weak transcription	Placenta	Placenta
19	chr6:145116000-145154800	Weak transcription	Spleen	Spleen
20	chr6:145116000-145155800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr6:145116200-145154400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr6:145116400-145155600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr6:145116400-145169000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr6:145117200-145137400	Strong transcription	Dnd41	blood
25	chr6:145117400-145175200	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr6:145117600-145148400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr6:145118200-145137000	Weak transcription	Psoas Muscle	Psoas
28	chr6:145119200-145134800	Weak transcription	GM12878-XiMat	blood
29	chr6:145119200-145155800	Weak transcription	Pancreas	Pancrea
30	chr6:145119600-145139600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:145119800-145131200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr6:145119800-145133000	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr6:145120000-145141600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr6:145120000-145145800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:145120000-145148800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr6:145120000-145155000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr6:145120200-145132400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:145120200-145134600	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr6:145120200-145134800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:145120200-145135200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr6:145120200-145145800	Weak transcription	Fetal Intestine Small	intestine
42	chr6:145120200-145145800	Weak transcription	Fetal Stomach	stomach
43	chr6:145120200-145148400	Weak transcription	Ovary	ovary
44	chr6:145120200-145156400	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr6:145120400-145131400	Weak transcription	A549	lung
46	chr6:145120400-145145800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr6:145120600-145131200	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr6:145120600-145133000	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr6:145120600-145134800	Weak transcription	Fetal Lung	lung
50	chr6:145120600-145148200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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