Variant report

Variant	rs7748226
Chromosome Location	chr6:145120256-145120257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10499235	1.00[CEU][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1111807	0.82[JPT][hapmap]
rs1111808	0.82[JPT][hapmap]
rs11155377	0.85[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs11756890	0.87[YRI][hapmap];0.91[AFR][1000 genomes]
rs17074175	0.83[CEU][hapmap]
rs17194806	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36094852	0.85[EUR][1000 genomes]
rs4143942	1.00[CEU][hapmap];0.83[CHB][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4571589	0.90[YRI][hapmap]
rs56383646	0.91[AFR][1000 genomes]
rs57793865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57997212	0.91[AFR][1000 genomes]
rs59277223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60747321	0.87[AFR][1000 genomes]
rs61088924	0.91[AFR][1000 genomes]
rs6901197	1.00[YRI][hapmap]
rs6905730	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6905731	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7755539	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7759754	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7761155	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7761905	0.91[AFR][1000 genomes]
rs9390222	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390235	0.83[JPT][hapmap]
rs9399503	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399507	0.81[JPT][hapmap]
rs9403611	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403617	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv886740	chr6:145105354-145199259	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145046000-145122200	Weak transcription	Colonic Mucosa	Colon
2	chr6:145066200-145126200	Weak transcription	Stomach Mucosa	stomach
3	chr6:145084000-145155800	Weak transcription	Right Ventricle	heart
4	chr6:145085800-145134800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:145089600-145138400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:145090000-145136800	Weak transcription	Fetal Heart	heart
7	chr6:145091000-145145000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:145094400-145136800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:145099600-145165800	Weak transcription	Small Intestine	intestine
10	chr6:145100000-145137600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr6:145100400-145125600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:145100400-145133200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:145100400-145145000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr6:145102200-145123600	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr6:145107800-145121000	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:145108400-145120600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:145110200-145124200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:145110400-145137000	Strong transcription	Primary B cells from cord blood	blood
19	chr6:145110800-145120600	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr6:145113600-145126400	Weak transcription	Brain Substantia Nigra	brain
21	chr6:145114200-145135600	Strong transcription	Primary B cells from peripheral blood	blood
22	chr6:145114600-145120600	Strong transcription	Duodenum Mucosa	Duodenum
23	chr6:145114600-145120800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:145114600-145121200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr6:145115200-145155000	Weak transcription	Esophagus	oesophagus
26	chr6:145115600-145121400	Strong transcription	Primary T cells from cord blood	blood
27	chr6:145115600-145131400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:145115600-145134800	Weak transcription	Lung	lung
29	chr6:145115800-145156600	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr6:145116000-145120600	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr6:145116000-145125600	Weak transcription	Fetal Muscle Trunk	muscle
32	chr6:145116000-145142000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr6:145116000-145148600	Weak transcription	Placenta	Placenta
34	chr6:145116000-145154800	Weak transcription	Spleen	Spleen
35	chr6:145116000-145155800	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr6:145116200-145125600	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr6:145116200-145154400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr6:145116400-145122000	Weak transcription	Brain Anterior Caudate	brain
39	chr6:145116400-145125800	Weak transcription	Fetal Muscle Leg	muscle
40	chr6:145116400-145126600	Weak transcription	Fetal Intestine Large	intestine
41	chr6:145116400-145155600	Weak transcription	Stomach Smooth Muscle	stomach
42	chr6:145116400-145169000	Weak transcription	Rectal Smooth Muscle	rectum
43	chr6:145117000-145120600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr6:145117200-145128800	Strong transcription	Primary hematopoietic stem cells	blood
45	chr6:145117200-145137400	Strong transcription	Dnd41	blood
46	chr6:145117400-145120600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr6:145117400-145120600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr6:145117400-145175200	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr6:145117600-145124000	Strong transcription	HepG2	liver
50	chr6:145117600-145148400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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