Variant report

Variant	rs11760447
Chromosome Location	chr7:33429588-33429589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10464225	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs10486529	0.91[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs10486530	1.00[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs10951387	1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs11762034	1.00[CEU][hapmap]
rs11763712	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs11764582	1.00[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs11764921	1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs11765727	0.88[ASN][1000 genomes]
rs11766818	0.87[ASN][1000 genomes]
rs11769334	0.87[ASN][1000 genomes]
rs11769616	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs11771086	1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs11773450	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs11773504	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs11976613	0.83[JPT][hapmap]
rs11977450	0.84[ASN][1000 genomes]
rs11978733	0.92[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs11982544	0.87[ASN][1000 genomes]
rs12056024	0.85[ASN][1000 genomes]
rs12056065	0.88[ASN][1000 genomes]
rs12056267	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs13225608	0.81[ASN][1000 genomes]
rs13230868	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs13234292	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs13234403	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs13236865	0.84[CHB][hapmap]
rs13236885	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs13238407	0.83[ASN][1000 genomes]
rs13239022	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs1419899	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs1419922	1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs1419923	1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs17170142	0.84[CHB][hapmap]
rs17170174	0.84[CHB][hapmap]
rs17170175	0.84[CHB][hapmap]
rs17170202	0.86[ASN][1000 genomes]
rs17170203	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs17170220	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs17170225	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs17170226	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs17170229	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs17170246	1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs17170247	1.00[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs17170253	1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs1833138	0.85[ASN][1000 genomes]
rs34305091	0.82[ASN][1000 genomes]
rs34711685	0.87[ASN][1000 genomes]
rs35067143	0.82[ASN][1000 genomes]
rs35557465	0.87[ASN][1000 genomes]
rs35850465	0.87[ASN][1000 genomes]
rs35940003	0.87[ASN][1000 genomes]
rs36109606	0.81[ASN][1000 genomes]
rs36112909	0.81[ASN][1000 genomes]
rs3735420	0.87[ASN][1000 genomes]
rs4270862	0.82[ASN][1000 genomes]
rs4270863	0.92[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs4723278	0.92[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs4723279	0.87[ASN][1000 genomes]
rs4723280	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs4723287	0.87[ASN][1000 genomes]
rs59644818	0.85[ASN][1000 genomes]
rs60118903	0.85[ASN][1000 genomes]
rs6952877	0.83[CHB][hapmap]
rs6953348	0.84[CHB][hapmap]
rs6965729	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs6966188	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs6968365	0.92[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs71532573	0.83[ASN][1000 genomes]
rs71532575	0.87[ASN][1000 genomes]
rs71532577	0.85[ASN][1000 genomes]
rs7776754	0.87[ASN][1000 genomes]
rs7783612	0.83[CHB][hapmap]
rs7810388	0.84[CHB][hapmap]
rs929524	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs9638888	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33389000-33437400	Weak transcription	Liver	Liver
2	chr7:33403400-33437800	Weak transcription	Brain Substantia Nigra	brain
3	chr7:33403800-33430400	Weak transcription	Brain Hippocampus Middle	brain
4	chr7:33404000-33433000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:33407000-33429600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr7:33408200-33431000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr7:33408200-33434600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr7:33408600-33434400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:33411800-33431000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:33412200-33433200	Weak transcription	Psoas Muscle	Psoas
11	chr7:33417200-33430400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr7:33417400-33429600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr7:33418000-33438600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr7:33418200-33436400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr7:33418600-33434800	Weak transcription	Fetal Kidney	kidney
16	chr7:33419000-33436800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr7:33420000-33433200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr7:33420000-33435000	Weak transcription	Brain Anterior Caudate	brain
19	chr7:33420400-33431800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr7:33420400-33435000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr7:33420400-33436400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr7:33420400-33444600	Weak transcription	Left Ventricle	heart
23	chr7:33420600-33429600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr7:33420600-33431800	Weak transcription	Aorta	Aorta
25	chr7:33420600-33433200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr7:33420600-33435000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr7:33420600-33435200	Weak transcription	Fetal Muscle Trunk	muscle
28	chr7:33420600-33437800	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr7:33420600-33449200	Weak transcription	Ovary	ovary
30	chr7:33420800-33430200	Weak transcription	Stomach Smooth Muscle	stomach
31	chr7:33420800-33432800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr7:33420800-33434600	Weak transcription	Fetal Muscle Leg	muscle
33	chr7:33420800-33435000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr7:33420800-33435000	Weak transcription	Fetal Lung	lung
35	chr7:33420800-33437400	Weak transcription	Fetal Intestine Large	intestine
36	chr7:33420800-33437800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr7:33421000-33439800	Weak transcription	Fetal Stomach	stomach
38	chr7:33421000-33442600	Weak transcription	Pancreas	Pancrea
39	chr7:33422200-33452200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr7:33422600-33437800	Weak transcription	Brain Angular Gyrus	brain
41	chr7:33424200-33435000	Weak transcription	Primary T cells from cord blood	blood
42	chr7:33424800-33434800	Weak transcription	Primary B cells from peripheral blood	blood
43	chr7:33425200-33435000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr7:33428200-33435200	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr7:33428200-33436200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr7:33428200-33438200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr7:33428200-33458000	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr7:33428600-33429600	Strong transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr7:33428600-33435000	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr7:33429400-33429800	Strong transcription	Adipose Nuclei	Adipose

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