Variant report

Variant	rs3735420
Chromosome Location	chr7:33407724-33407725
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:33407715..33410648-chr7:33411444..33414144,2	K562	blood:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10464225	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10486529	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10486530	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10951387	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11760447	0.87[ASN][1000 genomes]
rs11763712	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11764582	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11764921	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11765727	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11766818	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11768050	0.81[AMR][1000 genomes]
rs11769334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11771086	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11773450	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11773504	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11976613	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11977450	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11978733	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11982544	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12056024	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12056065	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12056267	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13224392	0.81[AMR][1000 genomes]
rs13225608	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13230868	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13234292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13234403	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13236885	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13238407	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13239022	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419899	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1419922	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1419923	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17170174	0.81[AMR][1000 genomes]
rs17170175	0.86[AMR][1000 genomes]
rs17170202	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17170203	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17170220	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17170225	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17170226	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17170229	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17170246	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17170247	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17170253	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1833138	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34213032	0.81[AMR][1000 genomes]
rs34305091	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34540469	0.81[AMR][1000 genomes]
rs34711685	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35067143	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35557465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35850465	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35940003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36081731	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs36109606	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36112909	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4270862	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4270863	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4723278	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4723279	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4723280	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4723287	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59644818	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60118903	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6965729	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6966188	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968365	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71532573	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71532575	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71532577	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7776754	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs929524	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs961679	0.87[EUR][1000 genomes]
rs9638889	0.81[AMR][1000 genomes]
rs9639675	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33355200-33419600	Weak transcription	Primary T cells from cord blood	blood
2	chr7:33384000-33425400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr7:33386400-33408200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:33387000-33425200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr7:33389000-33437400	Weak transcription	Liver	Liver
6	chr7:33392600-33423000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr7:33393600-33419600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr7:33394200-33419400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:33394200-33419600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:33394400-33427800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr7:33396600-33420000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr7:33396600-33422000	Weak transcription	Small Intestine	intestine
13	chr7:33402600-33419600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr7:33403000-33427400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr7:33403400-33437800	Weak transcription	Brain Substantia Nigra	brain
16	chr7:33403800-33419600	Weak transcription	Brain Angular Gyrus	brain
17	chr7:33403800-33430400	Weak transcription	Brain Hippocampus Middle	brain
18	chr7:33404000-33419800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr7:33404000-33433000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr7:33404600-33419600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr7:33404600-33419600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr7:33404800-33419600	Weak transcription	Right Ventricle	heart
23	chr7:33405000-33410800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr7:33405200-33415000	Weak transcription	Fetal Brain Female	brain
25	chr7:33405200-33420000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr7:33405200-33421600	Weak transcription	Colon Smooth Muscle	Colon
27	chr7:33405400-33418400	Weak transcription	Fetal Muscle Leg	muscle
28	chr7:33405400-33422200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr7:33405600-33409200	Weak transcription	Dnd41	blood
30	chr7:33405600-33419600	Weak transcription	Fetal Muscle Trunk	muscle
31	chr7:33405600-33423600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr7:33405800-33415800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr7:33405800-33418400	Weak transcription	Aorta	Aorta
34	chr7:33405800-33419600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr7:33405800-33419600	Weak transcription	Stomach Smooth Muscle	stomach
36	chr7:33406000-33409200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr7:33406000-33411000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr7:33406000-33418200	Weak transcription	Ovary	ovary
39	chr7:33406000-33419400	Weak transcription	Left Ventricle	heart
40	chr7:33406000-33419600	Weak transcription	Brain Anterior Caudate	brain
41	chr7:33406000-33419600	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr7:33406000-33419600	Weak transcription	Fetal Stomach	stomach
43	chr7:33406000-33419800	Weak transcription	Fetal Lung	lung
44	chr7:33406000-33425400	Weak transcription	Primary B cells from cord blood	blood
45	chr7:33406400-33425400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr7:33407000-33408200	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr7:33407000-33410200	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr7:33407000-33429600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr7:33407200-33408000	Strong transcription	Adipose Nuclei	Adipose
50	chr7:33407200-33409800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links