Variant report

Variant	rs36081731
Chromosome Location	chr7:33350590-33350591
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10240664	0.81[AMR][1000 genomes]
rs10262228	0.81[AMR][1000 genomes]
rs10272214	0.81[AMR][1000 genomes]
rs10486529	0.80[AMR][1000 genomes]
rs10486530	0.83[AMR][1000 genomes]
rs10951380	0.83[AMR][1000 genomes]
rs10951381	0.81[AMR][1000 genomes]
rs10951387	0.80[AMR][1000 genomes]
rs11763712	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11764582	0.80[AMR][1000 genomes]
rs11765727	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11766818	0.81[AMR][1000 genomes]
rs11768050	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11769334	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11769616	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11770322	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11771086	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11773450	0.81[AMR][1000 genomes]
rs11773504	0.80[AMR][1000 genomes]
rs11976613	0.83[AMR][1000 genomes]
rs11978733	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11982544	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12056065	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12056267	0.83[AFR][1000 genomes]
rs12666753	0.81[AMR][1000 genomes]
rs12674454	0.81[AMR][1000 genomes]
rs12701285	0.81[AMR][1000 genomes]
rs12701289	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1304294	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13224392	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13230868	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13234292	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs13234403	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13236865	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13236885	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13238407	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1419899	0.80[AMR][1000 genomes]
rs17150810	0.81[AMR][1000 genomes]
rs17170142	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17170174	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17170175	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17170202	0.80[AMR][1000 genomes]
rs17170203	0.80[AMR][1000 genomes]
rs17170226	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17170229	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1861298	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2160253	0.81[AMR][1000 genomes]
rs34213032	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34493378	0.83[AMR][1000 genomes]
rs34506512	0.81[AMR][1000 genomes]
rs34540469	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35067143	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35557465	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35665200	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35850465	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs35940003	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs36109606	0.83[AFR][1000 genomes]
rs3735420	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4270862	0.80[AMR][1000 genomes]
rs4270863	0.80[AMR][1000 genomes]
rs4723278	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4723279	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6952877	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6953348	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6956981	0.81[AMR][1000 genomes]
rs6965729	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6968365	0.80[AMR][1000 genomes]
rs71532573	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71532577	0.83[AFR][1000 genomes]
rs71534348	0.83[AMR][1000 genomes]
rs7776754	0.80[AMR][1000 genomes]
rs7777101	0.81[AMR][1000 genomes]
rs7783612	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7810388	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs929524	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9638888	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9638889	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs986554	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv887925	chr7:33304218-33361323	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3398087	chr7:33339761-33355341	Enhancers ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33328000-33354600	Weak transcription	Ovary	ovary
2	chr7:33334200-33357200	Weak transcription	Gastric	stomach
3	chr7:33340000-33351200	Weak transcription	Left Ventricle	heart
4	chr7:33340000-33354400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr7:33340000-33358600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr7:33343200-33361600	Weak transcription	Brain Angular Gyrus	brain
7	chr7:33344200-33355200	Weak transcription	Lung	lung
8	chr7:33344200-33359000	Weak transcription	Spleen	Spleen
9	chr7:33347400-33354600	Weak transcription	Aorta	Aorta
10	chr7:33349800-33350600	Weak transcription	Psoas Muscle	Psoas
11	chr7:33350000-33350600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr7:33350000-33350600	Enhancers	Fetal Lung	lung
13	chr7:33350400-33356000	Weak transcription	Fetal Muscle Leg	muscle

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