Variant report

Variant	rs11770322
Chromosome Location	chr7:33295491-33295492
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:33283153..33284693-chr7:33295167..33297777,2	K562	blood:

Extended variants
information (count: 144 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:140)

rs_ID	r²[population]
rs10224956	0.88[AMR][1000 genomes]
rs10227739	0.89[AMR][1000 genomes]
rs10232564	0.88[AMR][1000 genomes]
rs10233642	0.88[AMR][1000 genomes]
rs10233793	0.86[AMR][1000 genomes]
rs10236927	0.88[AMR][1000 genomes]
rs10237088	0.88[AMR][1000 genomes]
rs10240165	0.88[AMR][1000 genomes]
rs10240664	0.96[AMR][1000 genomes]
rs10241188	0.90[AMR][1000 genomes]
rs10255689	0.88[AMR][1000 genomes]
rs10260593	0.86[AMR][1000 genomes]
rs10261756	0.91[AMR][1000 genomes]
rs10262228	0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10269937	0.88[AMR][1000 genomes]
rs10270961	0.88[AMR][1000 genomes]
rs10272214	0.96[AMR][1000 genomes]
rs10272253	0.90[AMR][1000 genomes]
rs10278228	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10951376	0.88[AMR][1000 genomes]
rs10951377	0.93[AMR][1000 genomes]
rs10951380	0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10951381	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11760829	0.88[AMR][1000 genomes]
rs11760830	0.91[AMR][1000 genomes]
rs11763306	0.88[AMR][1000 genomes]
rs11765727	0.82[EUR][1000 genomes]
rs11766506	0.88[AMR][1000 genomes]
rs11766521	0.88[AMR][1000 genomes]
rs11768050	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11769811	0.88[AMR][1000 genomes]
rs11771086	0.82[EUR][1000 genomes]
rs11772401	0.91[AMR][1000 genomes]
rs11978733	0.82[EUR][1000 genomes]
rs11982544	0.82[EUR][1000 genomes]
rs12056065	0.82[EUR][1000 genomes]
rs12666753	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12669713	0.88[AMR][1000 genomes]
rs12671396	0.89[AMR][1000 genomes]
rs12673026	0.88[AMR][1000 genomes]
rs12674040	0.88[AMR][1000 genomes]
rs12674454	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12701275	0.88[AMR][1000 genomes]
rs12701285	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12701289	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1304294	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13224392	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13224684	0.93[AMR][1000 genomes]
rs13225836	0.91[AMR][1000 genomes]
rs13227275	0.88[AMR][1000 genomes]
rs13228512	0.88[AMR][1000 genomes]
rs13231353	0.88[AMR][1000 genomes]
rs13233383	0.91[AMR][1000 genomes]
rs13233431	0.93[AMR][1000 genomes]
rs13236414	0.88[AMR][1000 genomes]
rs13236865	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13238407	0.82[EUR][1000 genomes]
rs13240884	0.86[AMR][1000 genomes]
rs13244450	0.88[AMR][1000 genomes]
rs1362367	0.88[AMR][1000 genomes]
rs1406606	0.88[AMR][1000 genomes]
rs1468797	0.89[AMR][1000 genomes]
rs1548879	0.88[AMR][1000 genomes]
rs1569239	0.88[AMR][1000 genomes]
rs17150810	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17169835	0.88[AMR][1000 genomes]
rs17169840	0.88[AMR][1000 genomes]
rs17169847	0.88[AMR][1000 genomes]
rs17169855	0.88[AMR][1000 genomes]
rs17169881	0.88[AMR][1000 genomes]
rs17169913	0.93[AMR][1000 genomes]
rs17170142	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17170174	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17170175	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1861298	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2160253	0.96[AMR][1000 genomes]
rs2178343	0.88[AMR][1000 genomes]
rs28714260	0.88[AMR][1000 genomes]
rs28764825	0.93[AMR][1000 genomes]
rs28778101	0.88[AMR][1000 genomes]
rs28825171	0.88[AMR][1000 genomes]
rs34171272	0.91[AMR][1000 genomes]
rs34213032	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34262563	0.91[AMR][1000 genomes]
rs34493378	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34506512	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34540469	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35067143	0.82[EUR][1000 genomes]
rs35195868	0.88[AMR][1000 genomes]
rs35543773	0.88[AMR][1000 genomes]
rs35665200	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36081731	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36192455	0.88[AMR][1000 genomes]
rs3750123	0.88[AMR][1000 genomes]
rs4720103	0.88[AMR][1000 genomes]
rs4720104	0.88[AMR][1000 genomes]
rs4720105	0.88[AMR][1000 genomes]
rs4720106	0.86[AMR][1000 genomes]
rs4720107	0.88[AMR][1000 genomes]
rs4723254	0.88[AMR][1000 genomes]
rs4723255	0.88[AMR][1000 genomes]
rs4723256	0.88[AMR][1000 genomes]
rs4723258	0.88[AMR][1000 genomes]
rs4723259	0.88[AMR][1000 genomes]
rs4723260	0.85[AMR][1000 genomes]
rs4723262	0.88[AMR][1000 genomes]
rs4723266	0.88[AMR][1000 genomes]
rs4723278	0.82[EUR][1000 genomes]
rs4723279	0.82[EUR][1000 genomes]
rs59311005	0.88[AMR][1000 genomes]
rs60115200	0.88[AMR][1000 genomes]
rs6952877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6953193	0.93[AMR][1000 genomes]
rs6953313	0.88[AMR][1000 genomes]
rs6953348	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6956981	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6970226	0.88[AMR][1000 genomes]
rs6973757	0.91[AMR][1000 genomes]
rs6978749	0.88[AMR][1000 genomes]
rs71532562	0.88[AMR][1000 genomes]
rs71532563	0.84[AMR][1000 genomes]
rs71532565	0.88[AMR][1000 genomes]
rs71532573	0.82[EUR][1000 genomes]
rs71534347	0.86[AMR][1000 genomes]
rs71534348	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7457370	0.91[AMR][1000 genomes]
rs764127	0.88[AMR][1000 genomes]
rs7777101	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7783612	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7784516	0.88[AMR][1000 genomes]
rs7784540	0.88[AMR][1000 genomes]
rs7784815	0.88[AMR][1000 genomes]
rs7804742	0.88[AMR][1000 genomes]
rs7810388	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9638888	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9638889	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9791864	0.93[AMR][1000 genomes]
rs986554	0.96[AMR][1000 genomes]
rs987501	0.93[AMR][1000 genomes]
rs9886317	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33283800-33316000	Weak transcription	Ovary	ovary
2	chr7:33287200-33296000	Weak transcription	Pancreas	Pancrea
3	chr7:33288800-33317600	Weak transcription	Gastric	stomach
4	chr7:33289400-33309000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr7:33289600-33310800	Weak transcription	Psoas Muscle	Psoas
6	chr7:33290000-33316200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr7:33290800-33295800	Weak transcription	Fetal Lung	lung
8	chr7:33290800-33309000	Weak transcription	Fetal Stomach	stomach
9	chr7:33290800-33316400	Weak transcription	Aorta	Aorta
10	chr7:33291200-33297600	Weak transcription	Osteobl	bone
11	chr7:33291200-33297800	Weak transcription	Colon Smooth Muscle	Colon
12	chr7:33291200-33298000	Weak transcription	NHDF-Ad	bronchial
13	chr7:33291200-33316000	Weak transcription	Primary T cells from cord blood	blood
14	chr7:33291600-33305200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:33291800-33307600	Weak transcription	Left Ventricle	heart
16	chr7:33293400-33302200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:33295400-33299800	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links