Variant report

Variant	rs17170174
Chromosome Location	chr7:33337421-33337422
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 144 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:138)

rs_ID	r²[population]
rs10224956	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10227739	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10232564	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10240165	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs10240664	0.92[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs10241188	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10261756	1.00[CEU][hapmap]
rs10262228	0.83[AMR][1000 genomes]
rs10269937	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10270961	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10272214	0.83[AMR][1000 genomes]
rs10272253	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10278228	0.92[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs10464225	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs10486529	0.93[CEU][hapmap]
rs10486530	0.93[CEU][hapmap];0.85[CHB][hapmap]
rs10951376	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10951377	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10951380	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10951381	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10951387	0.93[CEU][hapmap];0.84[CHB][hapmap]
rs11760447	0.84[CHB][hapmap]
rs11760829	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11763306	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11763712	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs11764582	0.93[CEU][hapmap];0.85[CHB][hapmap]
rs11764921	0.84[CHB][hapmap]
rs11765727	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11766506	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11766521	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11768050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769334	0.81[AMR][1000 genomes]
rs11769616	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[AMR][1000 genomes]
rs11769811	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11770322	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11771086	0.93[CEU][hapmap];0.84[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11773450	0.93[CEU][hapmap];0.85[CHB][hapmap]
rs11773504	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs11976613	0.93[CEU][hapmap]
rs11978733	0.93[CEU][hapmap];0.92[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11982544	0.86[EUR][1000 genomes]
rs12056065	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12056267	0.93[CEU][hapmap];0.85[CHB][hapmap]
rs12666753	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12671396	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12673026	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs12674454	0.83[AMR][1000 genomes]
rs12701285	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12701289	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1304294	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13224392	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13227275	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13230868	0.93[CEU][hapmap];0.85[CHB][hapmap]
rs13234292	0.93[CEU][hapmap];0.84[CHB][hapmap];0.81[AMR][1000 genomes]
rs13234403	0.93[CEU][hapmap];0.85[CHB][hapmap]
rs13235723	1.00[JPT][hapmap]
rs13236414	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13236865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13236885	0.93[CEU][hapmap];0.85[CHB][hapmap]
rs13238407	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13239022	0.93[CEU][hapmap];0.85[CHB][hapmap]
rs13240884	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13244450	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1362367	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1406606	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs1419899	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs1419922	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs1419923	0.93[CEU][hapmap];0.85[CHB][hapmap]
rs1468797	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1548879	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1569239	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17150810	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs17169835	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17169847	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17169855	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17169881	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17169913	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17170142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17170175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17170203	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs17170220	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs17170225	0.93[CEU][hapmap];0.85[CHB][hapmap]
rs17170226	0.93[CEU][hapmap];0.85[CHB][hapmap]
rs17170229	0.93[CEU][hapmap];0.85[CHB][hapmap]
rs17170246	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs17170247	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs17170253	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs1861298	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2160253	0.86[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs34213032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34493378	0.84[AMR][1000 genomes]
rs34506512	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34540469	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35067143	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35557465	0.81[AMR][1000 genomes]
rs35665200	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35940003	0.81[AMR][1000 genomes]
rs36081731	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3735420	0.81[AMR][1000 genomes]
rs4270863	0.93[CEU][hapmap];0.92[CHB][hapmap]
rs4720103	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs4720104	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4720105	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4720106	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4720107	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4723255	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4723256	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4723257	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4723258	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4723259	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4723260	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4723262	1.00[CEU][hapmap]
rs4723278	0.93[CEU][hapmap];0.92[CHB][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4723279	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4723280	0.93[CEU][hapmap];0.81[CHB][hapmap]
rs6952877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6953348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6956981	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6965729	0.92[CEU][hapmap];0.84[CHB][hapmap]
rs6966188	0.93[CEU][hapmap];0.85[CHB][hapmap]
rs6968365	0.93[CEU][hapmap]
rs6973757	1.00[CEU][hapmap]
rs71532573	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71534348	0.84[AMR][1000 genomes]
rs764127	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7777101	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7783612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7793862	1.00[JPT][hapmap]
rs7804742	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7810388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs929524	0.93[CEU][hapmap];0.85[CHB][hapmap]
rs961679	0.92[CEU][hapmap]
rs9638888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9638889	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9639675	0.87[CEU][hapmap]
rs986554	0.93[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs987501	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs9886317	1.00[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv1792546	chr7:33304218-33346932	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv887925	chr7:33304218-33361323	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33317000-33347600	Weak transcription	Pancreas	Pancrea
2	chr7:33318600-33339600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr7:33328000-33339600	Weak transcription	Left Ventricle	heart
4	chr7:33328000-33354600	Weak transcription	Ovary	ovary
5	chr7:33328200-33339600	Weak transcription	Fetal Lung	lung
6	chr7:33329800-33339400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr7:33334200-33357200	Weak transcription	Gastric	stomach

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