Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39109858..39114276-chr7:39116660..39120717,5	K562	blood:
2	chr7:39112762..39114276-chr7:39117941..39120717,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11767715	0.87[GIH][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11769233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770808	0.87[GIH][hapmap];0.86[MEX][hapmap]
rs11773404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1405000	1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1464924	0.89[ASN][1000 genomes]
rs1525791	0.87[GIH][hapmap];0.86[MEX][hapmap]
rs17171546	1.00[GIH][hapmap]
rs17255994	0.88[CHB][hapmap];0.82[CHD][hapmap]
rs4442034	0.87[GIH][hapmap];1.00[MEX][hapmap]
rs5008508	0.89[ASN][1000 genomes]
rs61550119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62442180	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62442188	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62442189	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62442206	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6959715	0.92[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs723969	0.88[CHB][hapmap]
rs73120491	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7786896	0.88[CHB][hapmap];0.84[CHD][hapmap]
rs8180838	0.87[CEU][hapmap];0.86[CHB][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11761423	AOAH	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39113600-39123400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:39115600-39125200	Weak transcription	H1 Cell Line	embryonic stem cell

Quick Search: