Variant report

Variant	rs73120491
Chromosome Location	chr7:39093412-39093413
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11761423	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11767715	0.80[EUR][1000 genomes]
rs11769233	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11773404	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61550119	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62442180	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62442188	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62442189	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62442206	0.80[EUR][1000 genomes]
rs7786896	0.98[ASN][1000 genomes]
rs8180838	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39082400-39094000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:39091800-39097800	Weak transcription	Aorta	Aorta
3	chr7:39092400-39094000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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