Variant report

Variant	rs62442188
Chromosome Location	chr7:39111507-39111508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11761423	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767715	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11769233	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11773404	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1405000	0.89[ASN][1000 genomes]
rs1464924	0.89[ASN][1000 genomes]
rs5008508	0.89[ASN][1000 genomes]
rs61550119	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62442180	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62442189	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62442206	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6959715	0.89[ASN][1000 genomes]
rs73120491	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8180838	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39109000-39112600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr7:39109200-39111800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:39109200-39112400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:39109200-39112600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:39109600-39111600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:39109600-39112000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:39109600-39112000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:39109600-39113800	Weak transcription	Placenta	Placenta
9	chr7:39110400-39112000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr7:39111000-39111800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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