Variant report

Variant	rs11765726
Chromosome Location	chr7:2850878-2850879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:2727601..2730936-chr7:2847456..2852448,6	MCF-7	breast:
2	chr7:2850439..2853182-chr7:2881989..2885398,4	MCF-7	breast:
3	chr7:2850376..2852421-chr7:2873573..2876256,2	MCF-7	breast:
4	chr7:2850088..2852383-chr7:2882234..2885067,2	MCF-7	breast:
5	chr7:2841478..2843040-chr7:2849710..2851515,2	MCF-7	breast:
6	chr7:2796849..2800870-chr7:2849317..2851659,5	MCF-7	breast:
7	chr7:2843836..2848178-chr7:2849131..2851589,3	MCF-7	breast:
8	chr7:2849209..2851145-chr7:2867571..2870475,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231357	Chromatin interaction
ENSG00000146535	Chromatin interaction
ENSG00000174945	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10229834	1.00[JPT][hapmap]
rs11761804	0.92[CEU][hapmap]
rs11765386	1.00[JPT][hapmap]
rs11768054	1.00[ASN][1000 genomes]
rs11769532	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11770451	1.00[ASN][1000 genomes]
rs11971014	0.90[CEU][hapmap]
rs12540539	0.84[CEU][hapmap];0.91[AMR][1000 genomes]
rs17132624	0.91[CEU][hapmap];0.81[AMR][1000 genomes]
rs17132636	1.00[JPT][hapmap]
rs17132663	1.00[JPT][hapmap]
rs17132741	0.84[CEU][hapmap];0.83[AMR][1000 genomes]
rs17132744	0.84[CEU][hapmap];0.89[AMR][1000 genomes]
rs17241904	0.91[AMR][1000 genomes]
rs17300022	0.92[CEU][hapmap];0.83[AMR][1000 genomes]
rs28706013	1.00[ASN][1000 genomes]
rs34660119	1.00[ASN][1000 genomes]
rs55832916	0.81[AMR][1000 genomes]
rs56007918	0.91[AMR][1000 genomes]
rs6461600	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6945135	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6964740	0.86[AMR][1000 genomes]
rs6967664	0.88[AMR][1000 genomes]
rs73033403	0.88[AMR][1000 genomes]
rs73033407	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73033408	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73033414	1.00[ASN][1000 genomes]
rs73033417	1.00[ASN][1000 genomes]
rs73049305	0.81[AMR][1000 genomes]
rs73049331	0.81[AMR][1000 genomes]
rs73049362	0.91[AMR][1000 genomes]
rs73049380	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73051415	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73051444	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73051469	0.88[AMR][1000 genomes]
rs757788	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7783796	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7803944	0.81[AMR][1000 genomes]
rs7804264	0.84[AMR][1000 genomes]
rs7811164	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029250	chr7:2722737-2881021	Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv538652	chr7:2722737-2881021	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1015700	chr7:2753965-2945848	Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv1022612	chr7:2789555-3019200	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1018162	chr7:2817460-2891181	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
6	nsv538655	chr7:2817460-2891181	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
7	nsv1019463	chr7:2848448-2881872	Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:2842600-2869400	Weak transcription	Primary T cells from cord blood	blood
2	chr7:2842800-2851800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:2843000-2860800	Weak transcription	Esophagus	oesophagus
4	chr7:2843200-2855200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:2843200-2857400	Weak transcription	Brain Germinal Matrix	brain
6	chr7:2843200-2860800	Weak transcription	HSMMtube	muscle
7	chr7:2843200-2864400	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr7:2843400-2854400	Weak transcription	Colonic Mucosa	Colon
9	chr7:2843600-2852800	Weak transcription	Dnd41	blood
10	chr7:2843600-2857200	Weak transcription	Colon Smooth Muscle	Colon
11	chr7:2843600-2860600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:2843600-2864400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr7:2843800-2854800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr7:2844000-2858800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:2844200-2853400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr7:2845000-2853000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr7:2845800-2862200	Weak transcription	K562	blood
18	chr7:2847400-2853200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr7:2847800-2858800	Weak transcription	HSMM	muscle
20	chr7:2848000-2851800	Weak transcription	Fetal Kidney	kidney
21	chr7:2848200-2851000	Weak transcription	Fetal Thymus	thymus
22	chr7:2848200-2851400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr7:2848200-2852000	Enhancers	Hela-S3	cervix
24	chr7:2848200-2858800	Weak transcription	NHEK	skin
25	chr7:2848400-2853600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr7:2848400-2853600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr7:2848400-2858800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr7:2848400-2859400	Weak transcription	Fetal Intestine Large	intestine
29	chr7:2848600-2851000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr7:2848600-2852400	Enhancers	Muscle Satellite Cultured Cells	--
31	chr7:2848600-2852600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr7:2848600-2853000	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr7:2848600-2853200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr7:2848600-2854000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr7:2848600-2854000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr7:2848600-2864000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr7:2848800-2851200	Enhancers	NHLF	lung
38	chr7:2848800-2853000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr7:2848800-2853200	Weak transcription	GM12878-XiMat	blood
40	chr7:2848800-2854400	Weak transcription	Small Intestine	intestine
41	chr7:2848800-2857200	Weak transcription	Brain Substantia Nigra	brain
42	chr7:2848800-2858400	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr7:2848800-2858600	Weak transcription	Gastric	stomach
44	chr7:2848800-2863400	Weak transcription	Fetal Brain Female	brain
45	chr7:2848800-2874800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr7:2849000-2853000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr7:2849000-2857200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr7:2849400-2851200	Strong transcription	Fetal Intestine Small	intestine
49	chr7:2849400-2860800	Weak transcription	Stomach Mucosa	stomach
50	chr7:2849600-2851000	Enhancers	Lung	lung

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