Variant report

Variant	rs73033417
Chromosome Location	chr7:2882855-2882856
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:2869377..2877481-chr7:2880306..2885399,15	MCF-7	breast:
2	chr7:2801788..2804432-chr7:2882018..2884117,3	K562	blood:
3	chr7:2726313..2732670-chr7:2878755..2886203,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231357	Chromatin interaction
ENSG00000174945	Chromatin interaction
ENSG00000146535	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11765386	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11765473	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11765726	1.00[ASN][1000 genomes]
rs11766514	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11768001	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11768054	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769302	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11769669	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11770451	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770710	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11772176	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12540539	0.82[AMR][1000 genomes]
rs17132744	0.81[AMR][1000 genomes]
rs17241904	0.82[AMR][1000 genomes]
rs28706013	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34660119	1.00[ASN][1000 genomes]
rs35450876	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55752034	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56296737	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73033403	0.86[AMR][1000 genomes]
rs73033407	0.84[AMR][1000 genomes]
rs73033408	0.84[AMR][1000 genomes]
rs73033412	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73033414	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73033432	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73033457	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73033460	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73033466	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73033479	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73051469	0.86[AMR][1000 genomes]
rs7783796	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015700	chr7:2753965-2945848	Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1022612	chr7:2789555-3019200	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1018162	chr7:2817460-2891181	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv538655	chr7:2817460-2891181	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv887313	chr7:2875420-2927120	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv887314	chr7:2875420-2944187	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	esv3333602	chr7:2882776-2885274	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:2861400-2883000	Weak transcription	Thymus	Thymus
2	chr7:2865600-2883000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:2879800-2883400	Enhancers	Fetal Heart	heart
4	chr7:2881000-2883000	Transcr. at gene 5' and 3'	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:2881000-2883000	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
6	chr7:2881200-2883400	Enhancers	Fetal Brain Male	brain
7	chr7:2881400-2883000	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr7:2881600-2883200	Enhancers	Spleen	Spleen
9	chr7:2881800-2883000	Enhancers	Stomach Mucosa	stomach
10	chr7:2881800-2883600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:2882000-2883000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr7:2882000-2883000	Enhancers	K562	blood
13	chr7:2882000-2883200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr7:2882000-2883400	Flanking Active TSS	Adipose Nuclei	Adipose
15	chr7:2882000-2883400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr7:2882000-2883400	Flanking Active TSS	Placenta	Placenta
17	chr7:2882000-2883600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr7:2882000-2884400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr7:2882000-2884600	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr7:2882200-2883000	Enhancers	Primary B cells from cord blood	blood
21	chr7:2882200-2883000	Enhancers	Primary B cells from peripheral blood	blood
22	chr7:2882200-2883000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr7:2882200-2883200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr7:2882200-2883200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr7:2882200-2883400	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr7:2882200-2883600	Flanking Active TSS	Dnd41	blood
27	chr7:2882400-2883000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr7:2882400-2883000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
29	chr7:2882400-2883000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr7:2882400-2883000	Enhancers	Fetal Kidney	kidney
31	chr7:2882400-2883200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
32	chr7:2882400-2883200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr7:2882400-2883200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr7:2882400-2883200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr7:2882400-2883200	Flanking Active TSS	Brain Angular Gyrus	brain
36	chr7:2882400-2883200	Flanking Active TSS	Brain Anterior Caudate	brain
37	chr7:2882400-2883200	Flanking Active TSS	Brain Cingulate Gyrus	brain
38	chr7:2882400-2883200	Flanking Active TSS	Brain Hippocampus Middle	brain
39	chr7:2882400-2883200	Flanking Active TSS	Colon Smooth Muscle	Colon
40	chr7:2882400-2883200	Flanking Active TSS	Duodenum Mucosa	Duodenum
41	chr7:2882400-2883200	Flanking Active TSS	HepG2	liver
42	chr7:2882400-2883200	Flanking Active TSS	HMEC	breast
43	chr7:2882400-2883200	Flanking Active TSS	NH-A	brain
44	chr7:2882400-2883400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr7:2882400-2883400	Flanking Active TSS	Hela-S3	cervix
46	chr7:2882400-2883400	Flanking Active TSS	Osteobl	bone
47	chr7:2882400-2883600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
48	chr7:2882400-2884400	Active TSS	HUES48 Cell Line	embryonic stem cell
49	chr7:2882400-2884400	Active TSS	iPS-15b Cell Line	embryonic stem cell
50	chr7:2882400-2884800	Active TSS	NHLF	lung

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