Variant report

Variant	rs73033412
Chromosome Location	chr7:2881624-2881625
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:2869377..2877481-chr7:2880306..2885399,15	MCF-7	breast:
2	chr7:2726313..2732670-chr7:2878755..2886203,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174945	Chromatin interaction
ENSG00000231357	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11765386	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11765473	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11766514	0.92[AMR][1000 genomes]
rs11768001	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11769302	0.89[AMR][1000 genomes]
rs11769669	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11770451	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11770710	0.92[AMR][1000 genomes]
rs11772176	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12540539	0.86[AMR][1000 genomes]
rs17132744	0.84[AMR][1000 genomes]
rs17241904	0.86[AMR][1000 genomes]
rs28706013	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35450876	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55752034	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56296737	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73033403	0.89[AMR][1000 genomes]
rs73033407	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73033408	0.87[AMR][1000 genomes]
rs73033414	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73033417	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73033432	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73033457	0.92[AMR][1000 genomes]
rs73033460	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73033466	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73033479	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73051415	0.82[AMR][1000 genomes]
rs73051444	0.82[AMR][1000 genomes]
rs73051469	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015700	chr7:2753965-2945848	Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1022612	chr7:2789555-3019200	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1018162	chr7:2817460-2891181	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv538655	chr7:2817460-2891181	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv1019463	chr7:2848448-2881872	Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv887313	chr7:2875420-2927120	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv887314	chr7:2875420-2944187	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:2851800-2882800	Weak transcription	Aorta	Aorta
2	chr7:2861000-2881800	Weak transcription	Colonic Mucosa	Colon
3	chr7:2861400-2882200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr7:2861400-2883000	Weak transcription	Thymus	Thymus
5	chr7:2861800-2882400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr7:2862200-2882600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr7:2862800-2882400	Weak transcription	A549	lung
8	chr7:2864200-2882800	Weak transcription	Esophagus	oesophagus
9	chr7:2864800-2881800	Weak transcription	Fetal Thymus	thymus
10	chr7:2865000-2882400	Weak transcription	Fetal Kidney	kidney
11	chr7:2865400-2882600	Weak transcription	HSMMtube	muscle
12	chr7:2865600-2883000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr7:2872600-2882800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:2872800-2882600	Weak transcription	Psoas Muscle	Psoas
15	chr7:2872800-2882800	Weak transcription	Liver	Liver
16	chr7:2874600-2882400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:2874800-2882000	Weak transcription	NH-A	brain
18	chr7:2874800-2882800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr7:2875000-2882800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr7:2875400-2882000	Weak transcription	Gastric	stomach
21	chr7:2876000-2881800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr7:2876000-2882400	Weak transcription	HSMM	muscle
23	chr7:2876200-2882000	Weak transcription	Brain Hippocampus Middle	brain
24	chr7:2876200-2882000	Weak transcription	Ovary	ovary
25	chr7:2876200-2882800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr7:2876400-2881800	Enhancers	Primary B cells from peripheral blood	blood
27	chr7:2876800-2882000	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr7:2877000-2882000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr7:2877200-2882200	Weak transcription	Duodenum Mucosa	Duodenum
30	chr7:2877400-2882000	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr7:2877400-2882800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr7:2877600-2882000	Strong transcription	Fetal Muscle Trunk	muscle
33	chr7:2877600-2882400	Weak transcription	Primary T cells from cord blood	blood
34	chr7:2877600-2882600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr7:2877600-2882600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr7:2877800-2881800	Weak transcription	Stomach Mucosa	stomach
37	chr7:2877800-2882000	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr7:2877800-2882400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr7:2877800-2882600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr7:2878000-2882400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr7:2878000-2882600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr7:2878000-2882800	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr7:2878200-2882000	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr7:2878200-2882600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr7:2878200-2882800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr7:2878400-2882800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr7:2878600-2881800	Strong transcription	Fetal Stomach	stomach
48	chr7:2878600-2882200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr7:2878800-2882200	Weak transcription	HUVEC	blood vessel
50	chr7:2879000-2882400	Weak transcription	NHLF	lung

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