Variant report

Variant	rs11769669
Chromosome Location	chr7:2894744-2894745
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:2893756..2895887-chr7:2901589..2904569,2	K562	blood:
2	chr7:2890202..2892822-chr7:2894073..2897035,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11765386	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765473	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11766514	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11768001	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11768054	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11769302	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770451	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11770710	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11772176	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1182154	0.82[EUR][1000 genomes]
rs12540539	0.82[AMR][1000 genomes]
rs17132741	0.81[AMR][1000 genomes]
rs17132744	0.81[AMR][1000 genomes]
rs17241904	0.82[AMR][1000 genomes]
rs28706013	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35450876	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55752034	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56296737	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6978804	0.82[AMR][1000 genomes]
rs73033403	0.86[AMR][1000 genomes]
rs73033407	0.87[AMR][1000 genomes]
rs73033408	0.84[AMR][1000 genomes]
rs73033412	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73033414	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73033417	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73033432	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73033457	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73033460	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73033466	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73033479	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73033486	0.83[EUR][1000 genomes]
rs73033488	0.81[EUR][1000 genomes]
rs73033490	0.81[EUR][1000 genomes]
rs73033494	0.80[EUR][1000 genomes]
rs73051444	0.82[AMR][1000 genomes]
rs73051469	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015700	chr7:2753965-2945848	Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1022612	chr7:2789555-3019200	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv887313	chr7:2875420-2927120	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv887314	chr7:2875420-2944187	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:2884600-2896000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:2884600-2902800	Weak transcription	Right Ventricle	heart
3	chr7:2884800-2895800	Weak transcription	Fetal Heart	heart
4	chr7:2885000-2902000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:2890400-2895800	Weak transcription	Pancreas	Pancrea
6	chr7:2890400-2896400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:2891600-2902000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:2891600-2902000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:2891600-2902600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr7:2891600-2902800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr7:2892800-2902000	Weak transcription	NHLF	lung
12	chr7:2893200-2895800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr7:2893200-2902000	Weak transcription	Ovary	ovary
14	chr7:2893400-2900200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr7:2893400-2902600	Weak transcription	GM12878-XiMat	blood

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