Variant report

Variant	rs11768001
Chromosome Location	chr7:2887783-2887784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:2873423..2874992-chr7:2887430..2888992,2	MCF-7	breast:
2	chr7:2882986..2886273-chr7:2886531..2891062,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146535	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11765386	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11765473	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11766514	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11768054	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11769302	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11769669	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11770451	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11770710	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11772176	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12540539	0.86[AMR][1000 genomes]
rs17132744	0.84[AMR][1000 genomes]
rs17241904	0.86[AMR][1000 genomes]
rs28706013	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35450876	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55752034	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56296737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6978804	0.82[AMR][1000 genomes]
rs73033403	0.89[AMR][1000 genomes]
rs73033407	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73033408	0.87[AMR][1000 genomes]
rs73033412	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73033414	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73033417	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73033432	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73033457	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73033460	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73033466	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73033479	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73051415	0.82[AMR][1000 genomes]
rs73051444	0.82[AMR][1000 genomes]
rs73051469	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015700	chr7:2753965-2945848	Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1022612	chr7:2789555-3019200	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1018162	chr7:2817460-2891181	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv538655	chr7:2817460-2891181	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv887313	chr7:2875420-2927120	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv887314	chr7:2875420-2944187	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	esv3398295	chr7:2887626-2892424	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:2884600-2889600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:2884600-2889600	Weak transcription	Fetal Kidney	kidney
3	chr7:2884600-2896000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr7:2884600-2902800	Weak transcription	Right Ventricle	heart
5	chr7:2884800-2887800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:2884800-2887800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr7:2884800-2889600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:2884800-2889800	Weak transcription	Fetal Brain Male	brain
9	chr7:2884800-2889800	Weak transcription	Pancreas	Pancrea
10	chr7:2884800-2890600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr7:2884800-2891000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:2884800-2891200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:2884800-2891200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:2884800-2895800	Weak transcription	Fetal Heart	heart
15	chr7:2885000-2889600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:2885000-2889800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr7:2885000-2890400	Weak transcription	Dnd41	blood
18	chr7:2885000-2891000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr7:2885000-2902000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr7:2886600-2887800	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr7:2886600-2888000	Enhancers	Fetal Intestine Small	intestine

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