Variant report

Variant	rs11770710
Chromosome Location	chr7:2896123-2896124
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:2890202..2892822-chr7:2894073..2897035,2	MCF-7	breast:
2	chr7:2891216..2892935-chr7:2895055..2897737,2	K562	blood:
3	chr7:2795602..2798449-chr7:2895895..2897670,2	MCF-7	breast:
4	chr7:2895086..2897225-chr7:2913092..2915364,2	MCF-7	breast:
5	chr7:2894850..2898157-chr7:2912459..2915037,3	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10229834	1.00[JPT][hapmap]
rs11761804	0.93[MEX][hapmap]
rs11765386	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765473	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765726	1.00[JPT][hapmap]
rs11766514	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11768001	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11768054	0.83[AMR][1000 genomes]
rs11769302	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769669	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770451	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11772176	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11772508	0.85[MEX][hapmap]
rs1182154	0.83[EUR][1000 genomes]
rs12533845	0.81[CEU][hapmap]
rs12540539	0.82[AMR][1000 genomes]
rs17132636	1.00[JPT][hapmap]
rs17132663	1.00[JPT][hapmap]
rs17132741	0.93[MEX][hapmap];0.81[AMR][1000 genomes]
rs17132744	0.93[MEX][hapmap];0.81[AMR][1000 genomes]
rs17241904	0.82[AMR][1000 genomes]
rs17300022	0.93[MEX][hapmap]
rs28706013	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35450876	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55752034	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56199516	0.83[EUR][1000 genomes]
rs56296737	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6956368	1.00[CEU][hapmap]
rs6977940	1.00[CEU][hapmap]
rs6978804	0.82[AMR][1000 genomes]
rs73033403	0.86[AMR][1000 genomes]
rs73033407	0.87[AMR][1000 genomes]
rs73033408	0.84[AMR][1000 genomes]
rs73033412	0.92[AMR][1000 genomes]
rs73033414	0.94[AMR][1000 genomes]
rs73033417	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73033432	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73033457	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73033460	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73033466	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73033479	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73033486	0.87[EUR][1000 genomes]
rs73033488	0.85[EUR][1000 genomes]
rs73033490	0.85[EUR][1000 genomes]
rs73033494	0.84[EUR][1000 genomes]
rs73051444	0.82[AMR][1000 genomes]
rs73051469	0.86[AMR][1000 genomes]
rs757788	0.93[MEX][hapmap]
rs7783796	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015700	chr7:2753965-2945848	Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1022612	chr7:2789555-3019200	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv887313	chr7:2875420-2927120	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv887314	chr7:2875420-2944187	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv887315	chr7:2895627-2935424	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11770710	PRKAR1B	cis	parietal	SCAN
rs11770710	C7orf50	cis	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:2884600-2902800	Weak transcription	Right Ventricle	heart
2	chr7:2885000-2902000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr7:2890400-2896400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:2891600-2902000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:2891600-2902000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:2891600-2902600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr7:2891600-2902800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr7:2892800-2902000	Weak transcription	NHLF	lung
9	chr7:2893200-2902000	Weak transcription	Ovary	ovary
10	chr7:2893400-2900200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr7:2893400-2902600	Weak transcription	GM12878-XiMat	blood
12	chr7:2895800-2896600	Enhancers	Left Ventricle	heart
13	chr7:2895800-2896600	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr7:2895800-2897200	Enhancers	HepG2	liver
15	chr7:2895800-2897600	Enhancers	Pancreas	Pancrea
16	chr7:2895800-2902800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr7:2896000-2896600	Flanking Active TSS	Fetal Heart	heart

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