Variant report

Variant	rs73033460
Chromosome Location	chr7:2900662-2900663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:2899669..2908273-chr7:2908845..2917311,19	MCF-7	breast:
2	chr7:2840989..2843373-chr7:2899244..2901944,2	MCF-7	breast:
3	chr7:2898176..2901169-chr7:2925021..2926702,2	MCF-7	breast:
4	chr7:2899154..2902095-chr7:2911868..2915224,3	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11765386	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11765473	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11766514	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11768001	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11769302	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11769669	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11770451	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11770710	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11772176	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1182154	0.86[EUR][1000 genomes]
rs28706013	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35450876	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55752034	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56199516	0.86[EUR][1000 genomes]
rs56296737	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6978804	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73033403	0.82[AMR][1000 genomes]
rs73033407	0.84[AMR][1000 genomes]
rs73033408	0.81[AMR][1000 genomes]
rs73033412	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73033414	0.94[AMR][1000 genomes]
rs73033417	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73033432	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73033457	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73033466	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73033479	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73033486	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73033488	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73033490	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73033494	0.87[EUR][1000 genomes]
rs73051469	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015700	chr7:2753965-2945848	Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1022612	chr7:2789555-3019200	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv887313	chr7:2875420-2927120	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv887314	chr7:2875420-2944187	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv887315	chr7:2895627-2935424	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1022938	chr7:2899514-3131881	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:2884600-2902800	Weak transcription	Right Ventricle	heart
2	chr7:2885000-2902000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr7:2891600-2902000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:2891600-2902000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:2891600-2902600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr7:2891600-2902800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr7:2892800-2902000	Weak transcription	NHLF	lung
8	chr7:2893200-2902000	Weak transcription	Ovary	ovary
9	chr7:2893400-2902600	Weak transcription	GM12878-XiMat	blood
10	chr7:2895800-2902800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr7:2897400-2902800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:2897600-2902000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:2897600-2902200	Weak transcription	Placenta	Placenta
14	chr7:2898800-2902800	Weak transcription	HSMMtube	muscle
15	chr7:2898800-2903200	Weak transcription	Thymus	Thymus
16	chr7:2899400-2902600	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr7:2899800-2900800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr7:2900000-2900800	Enhancers	Fetal Muscle Trunk	muscle
19	chr7:2900000-2902800	Weak transcription	Pancreas	Pancrea
20	chr7:2900200-2900800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:2900200-2900800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr7:2900200-2900800	Enhancers	Duodenum Mucosa	Duodenum
23	chr7:2900200-2900800	Enhancers	NH-A	brain
24	chr7:2900200-2900800	Enhancers	NHEK	skin
25	chr7:2900200-2901200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:2900200-2901400	Enhancers	Stomach Mucosa	stomach
27	chr7:2900200-2902200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr7:2900200-2902600	Weak transcription	Gastric	stomach
29	chr7:2900200-2902600	Weak transcription	Small Intestine	intestine
30	chr7:2900400-2902600	Weak transcription	Fetal Muscle Leg	muscle
31	chr7:2900600-2900800	Enhancers	HepG2	liver
32	chr7:2900600-2902400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr7:2900600-2902400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr7:2900600-2902600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr7:2900600-2902600	Weak transcription	HMEC	breast
36	chr7:2900600-2902600	Weak transcription	HSMM	muscle
37	chr7:2900600-2902800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr7:2900600-2902800	Weak transcription	K562	blood
39	chr7:2900600-2903000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr7:2900600-2903000	Weak transcription	Fetal Intestine Small	intestine
41	chr7:2900600-2903600	Weak transcription	Brain Anterior Caudate	brain
42	chr7:2900600-2903600	Weak transcription	Brain Hippocampus Middle	brain
43	chr7:2900600-2904600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr7:2900600-2910400	Weak transcription	Esophagus	oesophagus

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