Variant report

Variant	rs11769302
Chromosome Location	chr7:2898839-2898840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:2896657..2898965-chr7:2903247..2905265,2	MCF-7	breast:
2	chr7:2898176..2901169-chr7:2925021..2926702,2	MCF-7	breast:
3	chr7:2726066..2728971-chr7:2898103..2899969,2	MCF-7	breast:
4	chr7:2897460..2900417-chr7:2901326..2905406,6	K562	blood:

Variant related genes	Relation type
ENSG00000174945	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11765386	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765473	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11766514	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11768001	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11768054	0.83[AMR][1000 genomes]
rs11769669	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770451	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11770710	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11772176	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1182154	0.82[EUR][1000 genomes]
rs28706013	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35450876	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55752034	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56296737	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73033403	0.82[AMR][1000 genomes]
rs73033407	0.84[AMR][1000 genomes]
rs73033408	0.81[AMR][1000 genomes]
rs73033412	0.89[AMR][1000 genomes]
rs73033414	0.94[AMR][1000 genomes]
rs73033417	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73033432	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73033457	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73033460	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73033466	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73033479	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73033486	0.83[EUR][1000 genomes]
rs73033488	0.82[EUR][1000 genomes]
rs73033490	0.82[EUR][1000 genomes]
rs73033494	0.81[EUR][1000 genomes]
rs73051469	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015700	chr7:2753965-2945848	Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1022612	chr7:2789555-3019200	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv887313	chr7:2875420-2927120	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv887314	chr7:2875420-2944187	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv887315	chr7:2895627-2935424	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	esv3412162	chr7:2898326-2900174	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:2884600-2902800	Weak transcription	Right Ventricle	heart
2	chr7:2885000-2902000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr7:2891600-2902000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:2891600-2902000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:2891600-2902600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr7:2891600-2902800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr7:2892800-2902000	Weak transcription	NHLF	lung
8	chr7:2893200-2902000	Weak transcription	Ovary	ovary
9	chr7:2893400-2900200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr7:2893400-2902600	Weak transcription	GM12878-XiMat	blood
11	chr7:2895800-2902800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr7:2896600-2900200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr7:2897400-2902800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:2897600-2899000	Enhancers	HepG2	liver
15	chr7:2897600-2899400	Weak transcription	Pancreas	Pancrea
16	chr7:2897600-2900200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:2897600-2900200	Weak transcription	Fetal Intestine Small	intestine
18	chr7:2897600-2902000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:2897600-2902200	Weak transcription	Placenta	Placenta
20	chr7:2898400-2899000	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr7:2898400-2900400	Enhancers	Fetal Muscle Leg	muscle
22	chr7:2898800-2900000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr7:2898800-2902800	Weak transcription	HSMMtube	muscle
24	chr7:2898800-2903200	Weak transcription	Thymus	Thymus

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