Variant report

Variant	rs34660119
Chromosome Location	chr7:2847211-2847212
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:2847142..2848969-chr7:2888487..2890440,2	MCF-7	breast:
2	chr7:2846127..2848012-chr7:2869367..2871756,2	K562	blood:
3	chr7:2843836..2848178-chr7:2849131..2851589,3	MCF-7	breast:
4	chr7:2846081..2849160-chr7:2882142..2884295,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146535	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11765726	1.00[ASN][1000 genomes]
rs11768054	1.00[ASN][1000 genomes]
rs11770451	1.00[ASN][1000 genomes]
rs28706013	1.00[ASN][1000 genomes]
rs73033414	1.00[ASN][1000 genomes]
rs73033417	1.00[ASN][1000 genomes]
rs7783796	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029250	chr7:2722737-2881021	Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv538652	chr7:2722737-2881021	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1015700	chr7:2753965-2945848	Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv1022612	chr7:2789555-3019200	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1018162	chr7:2817460-2891181	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
6	nsv538655	chr7:2817460-2891181	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:2834600-2847800	Weak transcription	Liver	Liver
2	chr7:2837000-2850600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:2839400-2848600	Enhancers	Fetal Heart	heart
4	chr7:2839400-2850800	Weak transcription	Primary B cells from cord blood	blood
5	chr7:2841000-2850200	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr7:2841200-2847400	Weak transcription	Primary B cells from peripheral blood	blood
7	chr7:2841400-2847400	Weak transcription	GM12878-XiMat	blood
8	chr7:2841400-2847800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr7:2842400-2850800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:2842600-2850600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:2842600-2869400	Weak transcription	Primary T cells from cord blood	blood
12	chr7:2842800-2850800	Weak transcription	HMEC	breast
13	chr7:2842800-2851800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr7:2843000-2847400	Weak transcription	Fetal Brain Female	brain
15	chr7:2843000-2847400	Weak transcription	Pancreas	Pancrea
16	chr7:2843000-2847800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:2843000-2847800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr7:2843000-2847800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr7:2843000-2847800	Weak transcription	Spleen	Spleen
20	chr7:2843000-2848200	Weak transcription	Brain Substantia Nigra	brain
21	chr7:2843000-2848600	Weak transcription	Stomach Mucosa	stomach
22	chr7:2843000-2860800	Weak transcription	Esophagus	oesophagus
23	chr7:2843200-2847400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr7:2843200-2847600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr7:2843200-2847800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr7:2843200-2848200	Enhancers	Fetal Lung	lung
27	chr7:2843200-2849800	Weak transcription	Osteobl	bone
28	chr7:2843200-2850200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr7:2843200-2850600	Weak transcription	Brain Anterior Caudate	brain
30	chr7:2843200-2850800	Weak transcription	Aorta	Aorta
31	chr7:2843200-2855200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr7:2843200-2857400	Weak transcription	Brain Germinal Matrix	brain
33	chr7:2843200-2860800	Weak transcription	HSMMtube	muscle
34	chr7:2843200-2864400	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr7:2843400-2847400	Weak transcription	Adipose Nuclei	Adipose
36	chr7:2843400-2847600	Weak transcription	Fetal Muscle Leg	muscle
37	chr7:2843400-2847800	Weak transcription	Gastric	stomach
38	chr7:2843400-2847800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr7:2843400-2847800	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr7:2843400-2850000	Weak transcription	Brain Hippocampus Middle	brain
41	chr7:2843400-2854400	Weak transcription	Colonic Mucosa	Colon
42	chr7:2843600-2847400	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr7:2843600-2847600	Weak transcription	Fetal Stomach	stomach
44	chr7:2843600-2848200	Weak transcription	Hela-S3	cervix
45	chr7:2843600-2852800	Weak transcription	Dnd41	blood
46	chr7:2843600-2857200	Weak transcription	Colon Smooth Muscle	Colon
47	chr7:2843600-2860600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr7:2843600-2864400	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr7:2843800-2847400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr7:2843800-2847600	Weak transcription	Fetal Kidney	kidney

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