Variant report

Variant	rs11768155
Chromosome Location	chr7:80365856-80365857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12113860	0.92[ASW][hapmap];0.87[GIH][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes]
rs12530485	1.00[ASN][1000 genomes]
rs12539736	1.00[ASN][1000 genomes]
rs13233776	0.98[ASN][1000 genomes]
rs1527467	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1527468	1.00[ASN][1000 genomes]
rs1527475	0.89[AFR][1000 genomes]
rs17154368	1.00[ASN][1000 genomes]
rs1852538	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1852539	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1949971	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes]
rs1949972	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2272351	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2886792	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.89[JPT][hapmap];0.85[LWK][hapmap];0.85[MKK][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778672	0.91[CHB][hapmap];0.96[ASN][1000 genomes]
rs3807092	1.00[JPT][hapmap]
rs41486545	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs6979109	0.93[ASN][1000 genomes]
rs73370806	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7456998	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80359200-80369000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:80359400-80369600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:80359400-80370200	Weak transcription	NHLF	lung
4	chr7:80359400-80378000	Weak transcription	Psoas Muscle	Psoas
5	chr7:80359600-80373800	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:80360600-80377800	Weak transcription	Left Ventricle	heart
7	chr7:80361400-80373600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr7:80363600-80385200	Weak transcription	Fetal Stomach	stomach
9	chr7:80365200-80366200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:80365400-80367000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr7:80365800-80366200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:80365800-80366200	Enhancers	HMEC	breast
13	chr7:80365800-80367000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr7:80365800-80367000	Enhancers	HSMM	muscle
15	chr7:80365800-80367000	Weak transcription	NH-A	brain
16	chr7:80365800-80367600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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