Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11768155	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12113860	0.87[GIH][hapmap]
rs12530485	0.98[ASN][1000 genomes]
rs12539736	0.98[ASN][1000 genomes]
rs13233776	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1527464	0.91[AFR][1000 genomes]
rs1527465	0.91[AFR][1000 genomes]
rs1527468	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17154368	0.98[ASN][1000 genomes]
rs1852538	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1852539	0.98[ASN][1000 genomes]
rs1949971	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1949972	1.00[CEU][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2272351	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2886792	1.00[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3778672	0.94[ASN][1000 genomes]
rs3807092	1.00[JPT][hapmap]
rs41486545	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs6979109	0.91[ASN][1000 genomes]
rs73370806	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73386847	0.88[AFR][1000 genomes]
rs7456998	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs954410	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80354800-80360200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:80355000-80360600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:80355400-80365800	Weak transcription	HSMM	muscle
4	chr7:80355800-80360200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:80355800-80360400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr7:80356200-80360400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr7:80359200-80369000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:80359400-80365800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:80359400-80369600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:80359400-80370200	Weak transcription	NHLF	lung
11	chr7:80359400-80378000	Weak transcription	Psoas Muscle	Psoas
12	chr7:80359600-80361200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr7:80359600-80362400	Weak transcription	Fetal Stomach	stomach
14	chr7:80359600-80362600	Weak transcription	Fetal Lung	lung
15	chr7:80359600-80373800	Weak transcription	Fetal Muscle Leg	muscle
16	chr7:80359800-80363000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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