Variant report

Variant	rs954410
Chromosome Location	chr7:80351673-80351674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80351533..80354256-chr7:80372076..80374883,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11765496	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11971792	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11982937	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11983746	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12055973	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12056187	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1334522	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1527464	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1527465	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1527467	0.88[AFR][1000 genomes]
rs1534313	0.91[EUR][1000 genomes]
rs16886849	0.90[EUR][1000 genomes]
rs17154337	0.90[EUR][1000 genomes]
rs17154380	1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs1830224	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1880957	0.86[EUR][1000 genomes]
rs1880958	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3778673	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs3778674	1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs3823476	0.82[EUR][1000 genomes]
rs55810607	0.85[EUR][1000 genomes]
rs6974236	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73370841	0.89[EUR][1000 genomes]
rs73370844	0.85[EUR][1000 genomes]
rs73386847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs954409	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv888526	chr7:80240943-80354229	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs954410	CD36	cis	parietal	SCAN

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80348600-80352200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr7:80348600-80353200	Enhancers	NHDF-Ad	bronchial
3	chr7:80348600-80354000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:80348600-80354800	Enhancers	HSMMtube	muscle
5	chr7:80348600-80356800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:80348800-80352000	Weak transcription	Fetal Brain Male	brain
7	chr7:80349000-80352200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:80349600-80353000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:80349600-80355200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr7:80349600-80355600	Enhancers	NHLF	lung
11	chr7:80349800-80353600	Enhancers	NHEK	skin
12	chr7:80350400-80354600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:80350600-80352000	Flanking Active TSS	A549	lung
14	chr7:80350600-80352400	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr7:80350600-80354800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr7:80350600-80355800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr7:80350800-80351800	Enhancers	NH-A	brain
18	chr7:80350800-80352000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr7:80350800-80352400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr7:80350800-80354000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr7:80350800-80354000	Enhancers	Adipose Nuclei	Adipose
22	chr7:80350800-80354000	Enhancers	Fetal Intestine Small	intestine
23	chr7:80350800-80354200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr7:80350800-80354200	Enhancers	HMEC	breast
25	chr7:80350800-80354600	Enhancers	Fetal Intestine Large	intestine
26	chr7:80350800-80354800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr7:80350800-80354800	Enhancers	Colon Smooth Muscle	Colon
28	chr7:80351000-80352200	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr7:80351000-80354800	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr7:80351000-80354800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr7:80351000-80355000	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr7:80351000-80355000	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr7:80351200-80352800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr7:80351200-80354200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr7:80351200-80354400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:80351200-80354400	Enhancers	Stomach Smooth Muscle	stomach
37	chr7:80351400-80351800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
38	chr7:80351400-80351800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
39	chr7:80351400-80352000	Weak transcription	Fetal Kidney	kidney
40	chr7:80351400-80352400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr7:80351400-80352400	Enhancers	H9 Cell Line	embryonic stem cell
42	chr7:80351400-80352400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr7:80351400-80352400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr7:80351400-80352600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
45	chr7:80351400-80352800	Enhancers	Rectal Smooth Muscle	rectum
46	chr7:80351400-80353200	Enhancers	Placenta Amnion	Placenta Amnion
47	chr7:80351400-80354400	Enhancers	H1 Cell Line	embryonic stem cell
48	chr7:80351400-80354400	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr7:80351400-80354800	Enhancers	Fetal Muscle Leg	muscle
50	chr7:80351400-80354800	Enhancers	Fetal Stomach	stomach

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