Variant report

Variant	rs1880957
Chromosome Location	chr7:80354229-80354230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80351533..80354256-chr7:80372076..80374883,2	MCF-7	breast:
2	chr7:80353835..80356426-chr7:80361541..80363244,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11762052	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11765496	0.92[EUR][1000 genomes]
rs11772970	0.83[EUR][1000 genomes]
rs11971792	0.84[EUR][1000 genomes]
rs11982937	0.84[EUR][1000 genomes]
rs11983007	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11983746	0.83[EUR][1000 genomes]
rs12055973	0.84[EUR][1000 genomes]
rs12056187	0.87[EUR][1000 genomes]
rs1334522	0.92[EUR][1000 genomes]
rs1527464	0.86[EUR][1000 genomes]
rs1527465	0.86[EUR][1000 genomes]
rs1527483	1.00[YRI][hapmap]
rs1534313	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16886849	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17154337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154380	0.90[CEU][hapmap];0.85[TSI][hapmap]
rs1830224	0.81[EUR][1000 genomes]
rs1880958	0.86[EUR][1000 genomes]
rs3211908	1.00[YRI][hapmap]
rs3211956	1.00[YRI][hapmap]
rs3778673	0.90[CEU][hapmap]
rs3778674	0.90[CEU][hapmap];0.85[TSI][hapmap]
rs3817557	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3823476	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55810607	0.81[EUR][1000 genomes]
rs6974236	0.80[EUR][1000 genomes]
rs73370844	0.81[EUR][1000 genomes]
rs73386847	0.86[EUR][1000 genomes]
rs954409	0.92[EUR][1000 genomes]
rs954410	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv888526	chr7:80240943-80354229	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1880957	CD36	cis	parietal	SCAN

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80348600-80354800	Enhancers	HSMMtube	muscle
2	chr7:80348600-80356800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:80349600-80355200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr7:80349600-80355600	Enhancers	NHLF	lung
5	chr7:80350400-80354600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:80350600-80354800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:80350600-80355800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr7:80350800-80354600	Enhancers	Fetal Intestine Large	intestine
9	chr7:80350800-80354800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:80350800-80354800	Enhancers	Colon Smooth Muscle	Colon
11	chr7:80351000-80354800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr7:80351000-80354800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:80351000-80355000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr7:80351000-80355000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr7:80351200-80354400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:80351200-80354400	Enhancers	Stomach Smooth Muscle	stomach
17	chr7:80351400-80354400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr7:80351400-80354400	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr7:80351400-80354800	Enhancers	Fetal Muscle Leg	muscle
20	chr7:80351400-80354800	Enhancers	Fetal Stomach	stomach
21	chr7:80351600-80354800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:80351800-80355400	Enhancers	HSMM	muscle
23	chr7:80352000-80354800	Enhancers	Osteobl	bone
24	chr7:80352000-80355000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:80352000-80355400	Enhancers	Muscle Satellite Cultured Cells	--
26	chr7:80352000-80358600	Weak transcription	Psoas Muscle	Psoas
27	chr7:80352200-80354800	Enhancers	NH-A	brain
28	chr7:80352200-80355000	Enhancers	Hela-S3	cervix
29	chr7:80352400-80354600	Weak transcription	Fetal Brain Male	brain
30	chr7:80352600-80355800	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr7:80352800-80354800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr7:80353000-80354800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr7:80353000-80354800	Enhancers	Fetal Lung	lung
34	chr7:80353200-80354600	Enhancers	Rectal Smooth Muscle	rectum
35	chr7:80353200-80356200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr7:80353400-80354400	Enhancers	Pancreatic Islets	Pancreatic Islet
37	chr7:80353400-80358600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr7:80353600-80354400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr7:80353600-80355400	Enhancers	NHDF-Ad	bronchial
40	chr7:80353800-80354800	Enhancers	H9 Cell Line	embryonic stem cell
41	chr7:80354000-80354400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
42	chr7:80354000-80354400	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr7:80354000-80354800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr7:80354000-80355000	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr7:80354000-80355200	Weak transcription	Small Intestine	intestine
46	chr7:80354000-80355800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr7:80354000-80356200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr7:80354000-80358600	Weak transcription	Adipose Nuclei	Adipose
49	chr7:80354000-80358600	Weak transcription	Ovary	ovary
50	chr7:80354000-80359000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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