Variant report

Variant	rs1534313
Chromosome Location	chr7:80370904-80370905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:80361578..80363736-chr7:80369634..80371408,2	MCF-7	breast:
2	chr7:80367015..80368560-chr7:80369337..80371836,2	MCF-7	breast:
3	chr7:80361342..80364032-chr7:80368718..80371307,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11765496	0.85[EUR][1000 genomes]
rs1334522	0.85[EUR][1000 genomes]
rs1527464	0.91[EUR][1000 genomes]
rs1527465	0.91[EUR][1000 genomes]
rs16886849	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17154337	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17154380	0.92[EUR][1000 genomes]
rs1830224	0.86[EUR][1000 genomes]
rs1880957	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1880958	0.91[EUR][1000 genomes]
rs3778673	0.92[EUR][1000 genomes]
rs3778674	0.92[EUR][1000 genomes]
rs3817557	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3823476	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55810607	0.94[EUR][1000 genomes]
rs6974236	0.85[EUR][1000 genomes]
rs73370841	0.90[EUR][1000 genomes]
rs73370844	0.94[EUR][1000 genomes]
rs73386847	0.91[EUR][1000 genomes]
rs954409	0.85[EUR][1000 genomes]
rs954410	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80359400-80378000	Weak transcription	Psoas Muscle	Psoas
2	chr7:80359600-80373800	Weak transcription	Fetal Muscle Leg	muscle
3	chr7:80360600-80377800	Weak transcription	Left Ventricle	heart
4	chr7:80361400-80373600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr7:80363600-80385200	Weak transcription	Fetal Stomach	stomach
6	chr7:80366200-80374000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:80368400-80394800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:80369000-80372400	Genic enhancers	HSMM	muscle
9	chr7:80369000-80377600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:80369200-80373800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr7:80369200-80374000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr7:80369200-80402200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:80369400-80372600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:80369600-80372400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr7:80369800-80371600	Enhancers	Hela-S3	cervix
16	chr7:80369800-80374000	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr7:80370000-80371000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr7:80370000-80372000	Enhancers	Osteobl	bone
19	chr7:80370000-80377800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr7:80370200-80371600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr7:80370200-80371800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:80370200-80372000	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr7:80370200-80372200	Enhancers	NH-A	brain
24	chr7:80370200-80372400	Enhancers	NHLF	lung
25	chr7:80370400-80371000	Flanking Active TSS	A549	lung
26	chr7:80370400-80374200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr7:80370600-80371000	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr7:80370600-80371000	Weak transcription	NHDF-Ad	bronchial
29	chr7:80370600-80371200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr7:80370600-80373600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr7:80370600-80374000	Weak transcription	Stomach Smooth Muscle	stomach
32	chr7:80370600-80400400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr7:80370800-80371200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr7:80370800-80371400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr7:80370800-80371400	Genic enhancers	HMEC	breast
36	chr7:80370800-80377800	Weak transcription	Brain Germinal Matrix	brain
37	chr7:80370800-80378000	Weak transcription	Rectal Smooth Muscle	rectum
38	chr7:80370800-80392200	Weak transcription	Fetal Lung	lung
39	chr7:80370800-80396000	Weak transcription	Aorta	Aorta

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