Variant report

Variant	rs3823476
Chromosome Location	chr7:80377766-80377767
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80373628..80375544-chr7:80375941..80377836,2	MCF-7	breast:
2	chr7:80375923..80378427-chr7:80394874..80396757,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11762052	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11765496	0.87[EUR][1000 genomes]
rs11983007	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1334522	0.87[EUR][1000 genomes]
rs1527464	0.82[EUR][1000 genomes]
rs1527465	0.82[EUR][1000 genomes]
rs1534313	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16886849	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17154337	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17154380	0.90[EUR][1000 genomes]
rs1880957	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1880958	0.82[EUR][1000 genomes]
rs3778673	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3778674	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3817557	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55810607	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73370841	0.87[EUR][1000 genomes]
rs73370844	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73386847	0.82[EUR][1000 genomes]
rs954409	0.87[EUR][1000 genomes]
rs954410	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80359400-80378000	Weak transcription	Psoas Muscle	Psoas
2	chr7:80360600-80377800	Weak transcription	Left Ventricle	heart
3	chr7:80363600-80385200	Weak transcription	Fetal Stomach	stomach
4	chr7:80368400-80394800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:80369200-80402200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:80370000-80377800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr7:80370600-80400400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:80370800-80377800	Weak transcription	Brain Germinal Matrix	brain
9	chr7:80370800-80378000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr7:80370800-80392200	Weak transcription	Fetal Lung	lung
11	chr7:80370800-80396000	Weak transcription	Aorta	Aorta
12	chr7:80371000-80410000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:80371200-80385200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr7:80371400-80381000	Strong transcription	HMEC	breast
15	chr7:80371800-80379000	Weak transcription	Fetal Brain Male	brain
16	chr7:80372000-80392600	Weak transcription	Ovary	ovary
17	chr7:80372400-80377800	Weak transcription	Fetal Brain Female	brain
18	chr7:80372400-80377800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr7:80372400-80381400	Strong transcription	HSMM	muscle
20	chr7:80372400-80401000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr7:80372600-80377800	Weak transcription	Fetal Intestine Small	intestine
22	chr7:80372600-80377800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr7:80372600-80378000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr7:80372600-80378400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr7:80372800-80396200	Weak transcription	Lung	lung
26	chr7:80373000-80382600	Strong transcription	Osteobl	bone
27	chr7:80373000-80383200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr7:80373000-80386000	Weak transcription	Right Ventricle	heart
29	chr7:80373400-80377800	Strong transcription	NHDF-Ad	bronchial
30	chr7:80373400-80380800	Strong transcription	Muscle Satellite Cultured Cells	--
31	chr7:80373400-80381000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr7:80373800-80396600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr7:80374000-80381000	Strong transcription	NHLF	lung
34	chr7:80374200-80396000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr7:80374400-80377800	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr7:80374600-80377800	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr7:80374600-80377800	Weak transcription	Colon Smooth Muscle	Colon
38	chr7:80374600-80377800	Weak transcription	Stomach Smooth Muscle	stomach
39	chr7:80374600-80380000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr7:80374600-80386400	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr7:80374600-80396000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr7:80374600-80401000	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr7:80374600-80410200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr7:80374800-80378000	Weak transcription	Fetal Intestine Large	intestine
45	chr7:80374800-80378600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr7:80375000-80377800	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr7:80376000-80380800	Strong transcription	Fetal Muscle Leg	muscle
48	chr7:80376200-80377800	Weak transcription	NH-A	brain
49	chr7:80376200-80381400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr7:80376600-80379800	Strong transcription	NHEK	skin

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