Variant report

Variant	rs11983007
Chromosome Location	chr7:80342701-80342702
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11762052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765496	0.84[EUR][1000 genomes]
rs11772970	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11971792	0.92[EUR][1000 genomes]
rs11982937	0.92[EUR][1000 genomes]
rs11983746	0.91[EUR][1000 genomes]
rs12055973	0.92[EUR][1000 genomes]
rs12056187	0.95[EUR][1000 genomes]
rs1334522	0.84[EUR][1000 genomes]
rs16886849	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17154337	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1880957	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3817557	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3823476	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs954409	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv888526	chr7:80240943-80354229	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv3375699	chr7:80341666-80344164	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80341200-80348600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:80341400-80348600	Weak transcription	NHLF	lung
3	chr7:80341400-80348800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:80342600-80351000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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