Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11762052	0.95[EUR][1000 genomes]
rs11765496	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11772970	0.86[EUR][1000 genomes]
rs11971792	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11982937	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11983007	0.95[EUR][1000 genomes]
rs11983746	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12055973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1334522	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1527464	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1527465	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16886849	0.83[EUR][1000 genomes]
rs17154337	0.83[EUR][1000 genomes]
rs1830224	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1880957	0.87[EUR][1000 genomes]
rs1880958	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6974236	0.92[ASN][1000 genomes]
rs73386847	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs954409	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs954410	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv888526	chr7:80240943-80354229	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80333000-80340600	Weak transcription	Osteobl	bone
2	chr7:80336800-80340800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr7:80337200-80340400	Weak transcription	NHDF-Ad	bronchial
4	chr7:80337200-80340800	Weak transcription	NHLF	lung
5	chr7:80337200-80341200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:80339800-80340800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr7:80339800-80341000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:80339800-80341000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr7:80340200-80340400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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